# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	7.56e-15	c.46.1.1	65975
2oucA	142	1.54e-14		
2a2kA	175	3.21e-14		
1ymkA	175	3.41e-13	c.46.1.1	123699
1c25	161	4.97e-13		
1qb0A	211	5.57e-13	c.46.1.1	32699
1t3kA	152	5.60e-12	c.46.1.1	106357
1gmxA	108	2.82e-11	c.46.1.3	65355
1yt8A	539	5.23e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	1.06e-10		
2j6pA	152	1.12e-10		
2fsxA	148	1.59e-10		
1e0cA	271	2.35e-10	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	2.74e-09	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	2.75e-09		
2gwfA	157	4.82e-09	c.46.1.4	135802
1uarA	285	8.45e-09	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	1.58e-08		
1whbA	157	2.23e-07	c.46.1.4	114639
1wv9A	94	4.83e-07		
1okgA	373	2.02e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2fcaA	213	13.40	c.66.1.53	133262
2rdmA	132	16.43		
1l6oA	95	25.25	b.36.1.1	84534
1y2qA	143	25.27		
1vkrA	125	30.90	c.44.2.1	108689
1rxwA	336	32.90	a.60.7.1,c.120.1.2	98059,98060
1pydA	556	32.94	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1xel	338	38.43		
1zckA	154	44.18		
1x24A	180	44.71		
1g7fA	298	46.61	c.45.1.2	60330
1nni1	174	47.33		
3b55A	451	47.50		
2yv1A	294	48.26		
2qtwA	124	50.37		
1g5rA	196	50.45	c.37.1.11	32367
2f71A	298	51.74	c.45.1.2	133070
1gxmA	332	53.40	a.102.5.1	76371
1udcA	338	53.91	c.2.1.2	29785
2ggsA	273	55.73		
1v3hA	495	56.37	c.1.8.1	108303
2gasA	307	57.75		
1qj5A	429	60.24	c.67.1.4	34493
1b1yA	500	60.99	c.1.8.1	28796
2ooqA	286	61.58		
2elcA	329	63.30		
2pidA	356	63.65		
1c3pA	375	67.45	c.42.1.2	32606
1byb	495	67.72		
1vjgA	218	67.86	c.23.10.6	100810
2bijA	305	68.03		
1ns5A	155	68.17	c.116.1.3	80705
1rxdA	159	68.18	c.45.1.1	111959
1rpmA	278	72.59	c.45.1.2	32679
1d5rA	324	73.36	b.7.1.1,c.45.1.1	23181,32697
2ob9A	130	74.83		
1npyA	271	76.32	c.2.1.7,c.58.1.5	85995,85996
2fn9A	290	81.26		
2qgmA	445	82.32		
2i75A	320	82.57		
1ptvA	321	83.06	c.45.1.2	32665
1wdpA	495	83.34	c.1.8.1	120907
1rtqA	299	84.19	c.56.5.4	97819
2oixA	186	87.60		
2pbnA	313	89.51