# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	1.45e-14	c.46.1.1	65975
2oucA	142	2.26e-14		
2a2kA	175	3.93e-14		
1ymkA	175	3.94e-13	c.46.1.1	123699
1qb0A	211	6.10e-13	c.46.1.1	32699
1c25	161	6.21e-13		
1t3kA	152	8.30e-12	c.46.1.1	106357
1gmxA	108	3.97e-11	c.46.1.3	65355
1yt8A	539	6.94e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2j6pA	152	1.28e-10		
2hhgA	139	1.46e-10		
2fsxA	148	2.34e-10		
1e0cA	271	2.70e-10	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	3.43e-09	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	4.06e-09		
2gwfA	157	4.63e-09	c.46.1.4	135802
1uarA	285	1.15e-08	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	1.65e-08		
1whbA	157	1.98e-07	c.46.1.4	114639
1wv9A	94	5.14e-07		
1okgA	373	2.19e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2fcaA	213	14.15	c.66.1.53	133262
2rdmA	132	16.57		
1y2qA	143	20.30		
1rxwA	336	23.47	a.60.7.1,c.120.1.2	98059,98060
1pydA	556	24.77	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1xel	338	30.28		
2yv1A	294	31.43		
1l6oA	95	33.40	b.36.1.1	84534
2pidA	356	33.79		
1vkrA	125	34.18	c.44.2.1	108689
1x24A	180	35.37		
1g7fA	298	36.22	c.45.1.2	60330
2f71A	298	37.44	c.45.1.2	133070
3b55A	451	39.26		
1zckA	154	40.31		
1udcA	338	40.77	c.2.1.2	29785
1g5rA	196	41.16	c.37.1.11	32367
1nni1	174	42.74		
1qj5A	429	43.00	c.67.1.4	34493
2gasA	307	47.41		
2ooqA	286	49.69		
1d5rA	324	50.54	b.7.1.1,c.45.1.1	23181,32697
1c3pA	375	50.76	c.42.1.2	32606
1vjgA	218	51.23	c.23.10.6	100810
1rxdA	159	54.72	c.45.1.1	111959
2bijA	305	56.12		
1v3hA	495	59.91	c.1.8.1	108303
1gxmA	332	59.99	a.102.5.1	76371
2ggsA	273	60.22		
1rpmA	278	60.77	c.45.1.2	32679
2hl0A	143	62.13		
2fn9A	290	62.81		
1ptvA	321	63.55	c.45.1.2	32665
1wq3A	322	64.32		
1b1yA	500	66.50	c.1.8.1	28796
2elcA	329	66.96		
2h4vA	320	68.94		
1rtqA	299	71.31	c.56.5.4	97819
1byb	495	71.45		
2qtwA	124	71.75		
2pbnA	313	73.13		
2qgmA	445	73.71		
1yfoA	302	74.79	c.45.1.2	32681
2qvcA	313	75.43		
2i75A	320	77.56		
2p4hX	322	77.68		
2pa5A	314	79.62		
2ob9A	130	81.00		
1wdpA	495	81.69	c.1.8.1	120907
1jztA	246	82.55	c.104.1.1	63319
1jsxA	207	83.63	c.66.1.20	71846
1lokA	291	84.19	c.56.5.4	78122
1npyA	271	86.08	c.2.1.7,c.58.1.5	85995,85996
3c6qA	311	89.71