# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	5.88e-15	c.46.1.1	65975
2oucA	142	1.17e-14		
2a2kA	175	2.19e-14		
1ymkA	175	2.33e-13	c.46.1.1	123699
1qb0A	211	3.45e-13	c.46.1.1	32699
1c25	161	3.72e-13		
1t3kA	152	3.99e-12	c.46.1.1	106357
1gmxA	108	2.66e-11	c.46.1.3	65355
1yt8A	539	4.49e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2j6pA	152	6.84e-11		
2hhgA	139	7.86e-11		
2fsxA	148	1.01e-10		
1e0cA	271	1.68e-10	c.46.1.2,c.46.1.2	32717,32718
2eg4A	230	2.57e-09		
1rhsA	296	2.87e-09	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	3.17e-09	c.46.1.4	135802
1uarA	285	7.57e-09	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	1.11e-08		
1whbA	157	1.25e-07	c.46.1.4	114639
1wv9A	94	3.62e-07		
1okgA	373	1.11e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2rdmA	132	14.21		
1y2qA	143	16.48		
2fcaA	213	17.87	c.66.1.53	133262
1rxwA	336	17.99	a.60.7.1,c.120.1.2	98059,98060
1xel	338	29.43		
1vkrA	125	33.32	c.44.2.1	108689
1x24A	180	35.58		
1pydA	556	35.82	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
2yv1A	294	36.24		
1g7fA	298	36.66	c.45.1.2	60330
1zckA	154	37.80		
2pidA	356	37.97		
1udcA	338	38.04	c.2.1.2	29785
1qj5A	429	38.80	c.67.1.4	34493
1l6oA	95	39.96	b.36.1.1	84534
1g5rA	196	40.04	c.37.1.11	32367
3b55A	451	40.37		
2ooqA	286	40.46		
1c3pA	375	41.60	c.42.1.2	32606
2f71A	298	41.79	c.45.1.2	133070
1vjgA	218	42.82	c.23.10.6	100810
1nni1	174	43.50		
2bijA	305	44.48		
2ggsA	273	46.80		
1d5rA	324	46.94	b.7.1.1,c.45.1.1	23181,32697
2hl0A	143	47.28		
1rpmA	278	48.21	c.45.1.2	32679
1rxdA	159	50.70	c.45.1.1	111959
1gxmA	332	51.33	a.102.5.1	76371
2qgmA	445	52.70		
1v3hA	495	60.02	c.1.8.1	108303
2elcA	329	60.44		
2h4vA	320	62.11		
1b1yA	500	62.93	c.1.8.1	28796
1yfoA	302	63.78	c.45.1.2	32681
1ptvA	321	65.47	c.45.1.2	32665
1wq3A	322	65.65		
2fn9A	290	65.98		
2pbnA	313	67.01		
2ob9A	130	67.09		
1byb	495	67.54		
1jztA	246	68.40	c.104.1.1	63319
2i75A	320	68.69		
2qtwA	124	70.25		
2gasA	307	73.07		
1rtqA	299	79.87	c.56.5.4	97819
1npyA	271	80.18	c.2.1.7,c.58.1.5	85995,85996
1rkuA	206	81.68	c.108.1.11	97627
2e0tA	151	82.68		
1j1uA	306	82.89	c.26.1.1	83980
1wdpA	495	82.97	c.1.8.1	120907
1zzwA	149	84.50		
1jsxA	207	84.74	c.66.1.20	71846
1ns5A	155	85.19	c.116.1.3	80705
2bvwA	362	86.37	c.6.1.1	30666
2oixA	186	87.14		
2pa5A	314	89.60