# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oucA	142	3.31e-11		
1hzmA	154	5.18e-11	c.46.1.1	65975
2a2kA	175	1.05e-10		
1ymkA	175	5.69e-10	c.46.1.1	123699
1qb0A	211	8.01e-10	c.46.1.1	32699
1c25	161	8.61e-10		
1t3kA	152	3.26e-09	c.46.1.1	106357
1gmxA	108	8.02e-09	c.46.1.3	65355
2hhgA	139	1.19e-08		
1yt8A	539	2.29e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2j6pA	152	2.87e-08		
1e0cA	271	3.91e-08	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	4.73e-08		
2gwfA	157	7.33e-08	c.46.1.4	135802
1rhsA	296	3.55e-07	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	4.65e-07		
1uarA	285	4.85e-07	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	7.27e-07		
1whbA	157	7.67e-07	c.46.1.4	114639
1wv9A	94	7.01e-06		
1okgA	373	7.35e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1v3hA	495	9.814	c.1.8.1	108303
1b1yA	500	11.03	c.1.8.1	28796
1byb	495	13.16		
1wdpA	495	14.82	c.1.8.1	120907
1ns5A	155	18.05	c.116.1.3	80705
2fcaA	213	36.02	c.66.1.53	133262
1ygmA	118	37.44		
1xel	338	45.85		
1oywA	523	51.66	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1y2qA	143	52.97		
2ggsA	273	55.55		
1d5yA	292	60.92	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1g5rA	196	61.04	c.37.1.11	32367
1zckA	154	66.65		
1udcA	338	78.50	c.2.1.2	29785
1x24A	180	81.21		
1tjyA	316	89.30	c.93.1.1	107062