# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	2.20e-14	c.46.1.1	65975
2oucA	142	5.58e-14		
2a2kA	175	9.94e-14		
1ymkA	175	1.01e-12	c.46.1.1	123699
1c25	161	1.16e-12		
1qb0A	211	1.42e-12	c.46.1.1	32699
1t3kA	152	1.55e-11	c.46.1.1	106357
1yt8A	539	3.78e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1gmxA	108	4.93e-11	c.46.1.3	65355
2hhgA	139	2.03e-10		
2j6pA	152	2.39e-10		
1e0cA	271	2.86e-10	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	4.01e-10		
1rhsA	296	2.37e-09	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	3.13e-09	c.46.1.4	135802
2eg4A	230	6.03e-09		
1rhs	296	1.13e-08		
1uarA	285	1.24e-08	c.46.1.2,c.46.1.2	107762,107763
1whbA	157	2.26e-07	c.46.1.4	114639
1wv9A	94	5.15e-07		
1okgA	373	8.46e-07	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1l6oA	95	19.10	b.36.1.1	84534
1rxwA	336	19.25	a.60.7.1,c.120.1.2	98059,98060
1y2qA	143	20.34		
1ns5A	155	20.40	c.116.1.3	80705
1jztA	246	25.69	c.104.1.1	63319
2fcaA	213	26.86	c.66.1.53	133262
1gxmA	332	30.55	a.102.5.1	76371
2ooqA	286	32.85		
1xel	338	34.16		
3b55A	451	36.73		
2f71A	298	40.03	c.45.1.2	133070
2rdmA	132	41.81		
1pydA	556	42.30	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1rtqA	299	44.73	c.56.5.4	97819
1zckA	154	44.79		
2fh7A	595	44.93		
2ob9A	130	46.39		
1qj5A	429	46.94	c.67.1.4	34493
1g5rA	196	47.03	c.37.1.11	32367
1g7fA	298	47.36	c.45.1.2	60330
2ggsA	273	47.52		
1d5rA	324	48.71	b.7.1.1,c.45.1.1	23181,32697
2gasA	307	51.42		
1ml8A	134	52.72	d.227.1.2	85013
2pidA	356	53.17		
1rxdA	159	54.78	c.45.1.1	111959
2hl0A	143	55.48		
1x24A	180	57.91		
2bijA	305	63.39		
1lokA	291	64.00	c.56.5.4	78122
2yv1A	294	64.26		
1vjgA	218	65.03	c.23.10.6	100810
2pa5A	314	69.71		
1udcA	338	69.78	c.2.1.2	29785
2elcA	329	69.88		
2qtwA	124	71.07		
1ptvA	321	71.37	c.45.1.2	32665
2pbnA	313	72.79		
1rpmA	278	74.98	c.45.1.2	32679
2qgmA	445	77.64		
1vkrA	125	80.25	c.44.2.1	108689
2i2qA	137	81.79		
3brsA	289	82.36		
2ywvA	244	83.29		
1qycA	308	83.53	c.2.1.2	96581
2i75A	320	83.87		
1oc7A	364	84.00	c.6.1.1	86794
1pa1A	310	88.95	c.45.1.2	94404