# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hzmA 154 2.78e-20 c.46.1.1 65975 2a2kA 175 1.33e-18 2oucA 142 6.04e-18 1ymkA 175 2.79e-16 c.46.1.1 123699 1c25 161 3.47e-16 1qb0A 211 4.27e-16 c.46.1.1 32699 1t3kA 152 6.02e-15 c.46.1.1 106357 1yt8A 539 4.28e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 5.58e-14 c.46.1.3 65355 2fsxA 148 3.05e-13 2j6pA 152 4.73e-13 2hhgA 139 5.25e-13 1e0cA 271 7.01e-13 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.05e-12 c.46.1.2,c.46.1.2 32703,32704 2gwfA 157 7.08e-12 c.46.1.4 135802 1rhs 296 1.34e-11 1uarA 285 2.34e-11 c.46.1.2,c.46.1.2 107762,107763 2eg4A 230 2.44e-11 1whbA 157 8.27e-10 c.46.1.4 114639 1okgA 373 4.14e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1wv9A 94 9.52e-09 2fcaA 213 0.5392 c.66.1.53 133262 1rxwA 336 1.724 a.60.7.1,c.120.1.2 98059,98060 1ordA 730 2.861 c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1zxmA 400 3.251 1cqeA 580 3.608 a.93.1.2,g.3.11.1 18703,44246 1kcw 1046 4.524 2c5uA 375 5.225 1ns5A 155 6.462 c.116.1.3 80705 2ggsA 273 7.162 2yv1A 294 7.407 1wdpA 495 11.01 c.1.8.1 120907 2aamA 309 11.52 c.1.8.15 126489 1gw1A 376 12.12 c.1.8.3 76361 2nteA 210 13.63 1mxgA 435 14.65 b.71.1.1,c.1.8.1 85193,85194 1g5rA 196 15.37 c.37.1.11 32367 1d5rA 324 16.61 b.7.1.1,c.45.1.1 23181,32697 1jztA 246 16.85 c.104.1.1 63319 2ob9A 130 17.10 1hskA 326 17.24 d.145.1.2,d.146.1.1 61241,61242 1u24A 337 18.24 c.45.1.4 112968 2qtwB 546 20.03 2veoA 441 20.04 1byb 495 20.46 2hl0A 143 21.35 1v3hA 495 21.66 c.1.8.1 108303 1xjo 284 21.79 1ee9A 320 22.22 c.2.1.7,c.58.1.2 30288,33936 2ot9A 180 22.31 2ixtA 310 22.83 1pl8A 356 23.27 b.35.1.2,c.2.1.1 94878,94879 2z1mA 345 23.61 2fh7A 595 24.02 1zu4A 320 25.23 1lw3A 657 25.25 b.55.1.8,c.45.1.3 91152,91153 2obeA 932 25.26 2ooqA 286 25.64 1mkaA 171 25.90 d.38.1.2 38543 1ydnA 295 26.15 2epgA 487 26.45 2z30A 320 29.00 2cfuA 658 29.24 2i2cA 272 29.46 1rpnA 335 30.00 c.2.1.2 97708 1kewA 361 30.60 c.2.1.2 68544 1l6oA 95 31.84 b.36.1.1 84534 2qtwA 124 32.11 2gasA 307 32.47 1udcA 338 33.72 c.2.1.2 29785 1zodA 433 34.66 c.67.1.4 125437 1ughI 82 34.80 d.17.5.1 38133 2q3mA 326 35.14 c.37.1.5 139795 1zckA 154 35.43 1glaG 501 36.30 c.55.1.4,c.55.1.4 33507,33508 1aukA 489 38.44 c.76.1.2 35030 1vhhA 162 39.30 d.65.1.2 39550 1pixA 587 40.88 c.14.1.4,c.14.1.4 118578,118579 1vjgA 218 41.62 c.23.10.6 100810 2ax3A 502 42.28 c.72.1.4,c.104.1.1 127477,127478 1vkrA 125 44.31 c.44.2.1 108689 1gt91 357 44.61 1qycA 308 44.98 c.2.1.2 96581 1o6dA 163 46.18 c.116.1.3 92567 1x24A 180 46.78 1xhkA 187 48.05 d.14.1.10 115299 2cjgA 449 48.48 2pnfA 248 50.06 1n3lA 372 50.36 c.26.1.1 79966 1xadA 345 50.49 c.77.1.1 35055 1c3pA 375 51.12 c.42.1.2 32606 1kutA 230 51.41 d.143.1.1 73017 1rpmA 278 51.46 c.45.1.2 32679 1g4uS 383 51.83 a.24.11.1,c.45.1.2 16643,32691 2frnA 278 52.19 c.66.1.47 133993 1vhh 162 52.80 2bijA 305 53.09 2g3wA 182 54.54 1lyvA 306 55.49 c.45.1.2 74348 1p77A 272 56.37 c.2.1.7,c.58.1.5 94214,94215 1iyeA 309 56.59 e.17.1.1 83786 1y2qA 143 57.04 1amk 251 57.15 2h4vA 320 57.19 1z15A 344 57.96 1kqzA 273 59.12 c.1.8.5 68844 1ml8A 134 60.98 d.227.1.2 85013 5eauA 548 61.46 a.102.4.1,a.128.1.3 18851,19443 1ztpA 251 61.52 d.86.1.2 125649 2d1gA 498 63.68 2elcA 329 63.85 1pydA 556 64.45 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 1pguA 615 64.64 b.69.4.1,b.69.4.1 88069,88070 1n4aA 252 64.83 c.92.2.2 85317 1dwmA 70 65.00 d.40.1.1 38583 1skyE 473 67.62 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 1pa1A 310 67.76 c.45.1.2 94404 1yqtA 538 69.12 1woqA 267 71.35 c.55.1.10,c.55.1.10 109462,109463 2b49A 287 72.03 2gt1A 326 73.22 3c6qA 311 74.91 1v73A 342 75.77 1jsxA 207 79.37 c.66.1.20 71846 2aumA 317 79.38 c.8.10.1,c.23.16.7 127330,127331 1vhrA 184 79.65 c.45.1.1 32651 2i2qA 137 80.49 2j5zA 221 82.25 2plcA 274 83.68 c.1.18.2 29614 1arv 344 84.43 2qahA 303 84.76 1yx2A 365 85.01 2yziA 138 86.44 1s95A 333 86.72 d.159.1.3 105375 1g5tA 196 87.74 c.37.1.11 32366 2fn9A 290 88.49 1zd1A 284 89.98