# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	1.63e-16	c.46.1.1	65975
2oucA	142	1.33e-15		
2a2kA	175	1.67e-15		
1ymkA	175	2.52e-14	c.46.1.1	123699
1c25	161	3.08e-14		
1qb0A	211	3.27e-14	c.46.1.1	32699
1t3kA	152	1.85e-13	c.46.1.1	106357
1gmxA	108	3.15e-12	c.46.1.3	65355
1yt8A	539	5.20e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2j6pA	152	9.45e-12		
2hhgA	139	1.50e-11		
2fsxA	148	2.07e-11		
1e0cA	271	2.36e-11	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	2.28e-10	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	3.38e-10		
2gwfA	157	4.00e-10	c.46.1.4	135802
1uarA	285	7.10e-10	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	2.29e-09		
1whbA	157	2.49e-08	c.46.1.4	114639
1wv9A	94	5.60e-08		
1okgA	373	2.33e-07	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2fcaA	213	12.08	c.66.1.53	133262
1rxwA	336	15.86	a.60.7.1,c.120.1.2	98059,98060
1y2qA	143	16.57		
1gxmA	332	22.87	a.102.5.1	76371
1l6oA	95	26.25	b.36.1.1	84534
1pydA	556	33.02	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1qj5A	429	35.43	c.67.1.4	34493
1d5rA	324	36.88	b.7.1.1,c.45.1.1	23181,32697
1xel	338	39.96		
1g7fA	298	43.92	c.45.1.2	60330
2rdmA	132	44.02		
1eziA	228	44.62	c.68.1.13	34512
2f71A	298	46.16	c.45.1.2	133070
2ooqA	286	46.33		
2pidA	356	46.80		
2gasA	307	47.82		
1x24A	180	48.91		
2hl0A	143	51.78		
1zckA	154	53.75		
1g5rA	196	54.76	c.37.1.11	32367
3b55A	451	54.91		
1rxdA	159	55.28	c.45.1.1	111959
1o7dA	298	58.08	c.6.2.1	86641
1rpmA	278	58.44	c.45.1.2	32679
1rtqA	299	58.61	c.56.5.4	97819
2ggsA	273	59.25		
1v3hA	495	62.08	c.1.8.1	108303
1vkrA	125	67.23	c.44.2.1	108689
2yv1A	294	68.58		
1b1yA	500	70.13	c.1.8.1	28796
1udcA	338	72.59	c.2.1.2	29785
1xjo	284	76.21		
1z7dA	433	76.89	c.67.1.4	124600
1byb	495	77.84		
2qtwA	124	78.29		
2c31A	568	79.82	c.31.1.3,c.36.1.5,c.36.1.9	129704,129705,129706
1wvgA	359	80.77	c.2.1.2	121339
1nni1	174	81.14		
2h4vA	320	82.55		
1vhhA	162	83.09	d.65.1.2	39550
1jztA	246	83.45	c.104.1.1	63319
1ptvA	321	85.39	c.45.1.2	32665
2bijA	305	86.61		
2pbnA	313	89.32