# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	1.44e-14	c.46.1.1	65975
2oucA	142	1.67e-14		
2a2kA	175	3.90e-14		
1ymkA	175	4.26e-13	c.46.1.1	123699
1qb0A	211	5.94e-13	c.46.1.1	32699
1c25	161	7.36e-13		
1t3kA	152	3.72e-12	c.46.1.1	106357
1gmxA	108	2.78e-11	c.46.1.3	65355
1yt8A	539	4.36e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2j6pA	152	9.62e-11		
2hhgA	139	9.66e-11		
2fsxA	148	2.83e-10		
1e0cA	271	3.42e-10	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	1.03e-09	c.46.1.2,c.46.1.2	32703,32704
2gwfA	157	2.45e-09	c.46.1.4	135802
2eg4A	230	3.51e-09		
1uarA	285	6.61e-09	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	1.06e-08		
1whbA	157	5.58e-08	c.46.1.4	114639
1wv9A	94	1.71e-07		
1okgA	373	7.09e-07	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1y2qA	143	15.26		
1gxmA	332	16.97	a.102.5.1	76371
1rxwA	336	21.20	a.60.7.1,c.120.1.2	98059,98060
1xel	338	24.86		
2ooqA	286	33.33		
1pydA	556	33.34	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1d5rA	324	34.13	b.7.1.1,c.45.1.1	23181,32697
1rpmA	278	35.88	c.45.1.2	32679
2fcaA	213	37.08	c.66.1.53	133262
2yv1A	294	37.22		
1udcA	338	41.68	c.2.1.2	29785
1eziA	228	41.76	c.68.1.13	34512
2f71A	298	42.01	c.45.1.2	133070
1g7fA	298	42.03	c.45.1.2	60330
1qj5A	429	42.16	c.67.1.4	34493
2hl0A	143	45.69		
1l6oA	95	48.29	b.36.1.1	84534
1x24A	180	49.01		
1zckA	154	49.03		
1rxdA	159	49.84	c.45.1.1	111959
2gasA	307	50.09		
1vkrA	125	51.17	c.44.2.1	108689
1g5rA	196	54.24	c.37.1.11	32367
2rdmA	132	55.00		
1v3hA	495	56.10	c.1.8.1	108303
1rtqA	299	59.54	c.56.5.4	97819
3b55A	451	59.59		
2ggsA	273	66.35		
2pbnA	313	67.51		
2bijA	305	68.23		
1byb	495	69.05		
1b1yA	500	69.21	c.1.8.1	28796
1ptvA	321	72.02	c.45.1.2	32665
1lokA	291	73.19	c.56.5.4	78122
2pidA	356	77.60		
3bv0A	437	78.54		
1p15A	253	80.10	c.45.1.2	93894
1z7dA	433	81.91	c.67.1.4	124600
1zzwA	149	81.99		
1dfuP	94	83.17	b.53.1.1	26936
2ob9A	130	83.28		
2elcA	329	84.92		
1o7dA	298	85.22	c.6.2.1	86641
1yfoA	302	85.27	c.45.1.2	32681
2p4hX	322	85.42		
1nni1	174	86.69		
2pa5A	314	87.19		
2h4vA	320	87.61		
2imgA	151	88.73