# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	9.51e-14	c.46.1.1	65975
2oucA	142	1.28e-13		
2a2kA	175	1.38e-13		
1ymkA	175	1.34e-12	c.46.1.1	123699
1qb0A	211	1.63e-12	c.46.1.1	32699
1c25	161	1.96e-12		
1t3kA	152	1.70e-11	c.46.1.1	106357
1gmxA	108	8.29e-11	c.46.1.3	65355
1yt8A	539	1.32e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	2.20e-10		
2j6pA	152	3.56e-10		
1e0cA	271	5.52e-10	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	7.69e-10		
2gwfA	157	3.96e-09	c.46.1.4	135802
1rhsA	296	5.78e-09	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	6.65e-09		
1uarA	285	7.25e-09	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	2.50e-08		
1whbA	157	1.74e-07	c.46.1.4	114639
1wv9A	94	3.01e-07		
1okgA	373	2.08e-06	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1rxwA	336	18.95	a.60.7.1,c.120.1.2	98059,98060
1y2qA	143	21.52		
2fcaA	213	28.43	c.66.1.53	133262
1xel	338	31.33		
2gasA	307	34.63		
1vkrA	125	37.67	c.44.2.1	108689
1pydA	556	39.02	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1g7fA	298	41.45	c.45.1.2	60330
2ooqA	286	41.69		
3b55A	451	43.14		
1rpmA	278	43.48	c.45.1.2	32679
1gxmA	332	43.59	a.102.5.1	76371
1l6oA	95	44.59	b.36.1.1	84534
1udcA	338	45.59	c.2.1.2	29785
1x24A	180	47.06		
2rdmA	132	49.91		
2f71A	298	51.35	c.45.1.2	133070
1g5rA	196	52.20	c.37.1.11	32367
1d5rA	324	54.03	b.7.1.1,c.45.1.1	23181,32697
1zckA	154	54.43		
2yv1A	294	54.69		
2ggsA	273	59.00		
1rxdA	159	62.85	c.45.1.1	111959
2hl0A	143	63.01		
1jztA	246	65.78	c.104.1.1	63319
2fh7A	595	67.46		
2elcA	329	70.68		
2pidA	356	70.71		
2qtwA	124	71.51		
2pbnA	313	73.59		
1o7dA	298	74.05	c.6.2.1	86641
1b1yA	500	74.54	c.1.8.1	28796
1nni1	174	75.25		
1p15A	253	76.55	c.45.1.2	93894
1rtqA	299	76.68	c.56.5.4	97819
2bijA	305	76.94		
2oemA	413	81.78		
1qycA	308	82.01	c.2.1.2	96581
1vhhA	162	82.45	d.65.1.2	39550
2e0tA	151	84.00		
1yfoA	302	88.11	c.45.1.2	32681
2ob9A	130	89.14		
1rkuA	206	89.58	c.108.1.11	97627
1ptvA	321	89.74	c.45.1.2	32665