# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a2kA	175	1.00e-10		
2oucA	142	1.03e-10		
1hzmA	154	1.22e-10	c.46.1.1	65975
1ymkA	175	8.49e-10	c.46.1.1	123699
1c25	161	1.06e-09		
1qb0A	211	1.44e-09	c.46.1.1	32699
1t3kA	152	8.79e-09	c.46.1.1	106357
1gmxA	108	2.12e-08	c.46.1.3	65355
2j6pA	152	4.33e-08		
2hhgA	139	4.37e-08		
2fsxA	148	6.02e-08		
2gwfA	157	6.07e-08	c.46.1.4	135802
1yt8A	539	8.45e-08	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1e0cA	271	1.07e-07	c.46.1.2,c.46.1.2	32717,32718
1whbA	157	6.01e-07	c.46.1.4	114639
1uarA	285	1.04e-06	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	2.30e-06	c.46.1.2,c.46.1.2	32703,32704
2eg4A	230	2.75e-06		
1rhs	296	3.45e-06		
1okgA	373	2.63e-05	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	0.000146		
2gt1A	326	21.35		
1y2qA	143	24.91		
1dosA	358	25.27	c.1.10.2	29175
1xel	338	29.12		
2fcaA	213	31.43	c.66.1.53	133262
1c9kA	180	36.72	c.37.1.11	32363
1zodA	433	46.33	c.67.1.4	125437
1udcA	338	47.62	c.2.1.2	29785
1v3hA	495	51.82	c.1.8.1	108303
2hl0A	143	54.85		
2plc	274	61.01		
2q7sA	290	63.54		
1b1yA	500	63.81	c.1.8.1	28796
1byb	495	66.13		
1ns5A	155	66.42	c.116.1.3	80705
1ag9A	175	72.26	c.23.5.1	31178
2rdmA	132	76.34		
1qj5A	429	76.43	c.67.1.4	34493
2plcA	274	82.29	c.1.18.2	29614
2g9zA	348	82.40