# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hzmA	154	5.60e-14	c.46.1.1	65975
2oucA	142	1.66e-13		
2a2kA	175	3.33e-13		
1qb0A	211	5.26e-12	c.46.1.1	32699
1c25	161	6.20e-12		
1ymkA	175	6.21e-12	c.46.1.1	123699
1t3kA	152	9.64e-12	c.46.1.1	106357
1gmxA	108	2.03e-10	c.46.1.3	65355
2j6pA	152	2.77e-10		
1yt8A	539	3.44e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	4.37e-10		
2fsxA	148	1.57e-09		
1e0cA	271	1.59e-09	c.46.1.2,c.46.1.2	32717,32718
2gwfA	157	5.15e-09	c.46.1.4	135802
2eg4A	230	1.35e-08		
1uarA	285	1.75e-08	c.46.1.2,c.46.1.2	107762,107763
1rhsA	296	3.30e-08	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	3.79e-08		
1whbA	157	8.25e-08	c.46.1.4	114639
1okgA	373	7.35e-07	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1wv9A	94	8.95e-07		
1zckA	154	22.52		
2fcaA	213	24.15	c.66.1.53	133262
1qj5A	429	24.29	c.67.1.4	34493
1rxdA	159	24.50	c.45.1.1	111959
2fh7A	595	25.97		
1zodA	433	26.78	c.67.1.4	125437
1pydA	556	29.67	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
2ooqA	286	32.01		
1x24A	180	32.48		
1d5rA	324	36.26	b.7.1.1,c.45.1.1	23181,32697
2q7sA	290	38.70		
1dtyA	429	41.39	c.67.1.4	34495
1s0aA	429	47.38	c.67.1.4	98263
1rxwA	336	48.25	a.60.7.1,c.120.1.2	98059,98060
2h4vA	320	51.07		
2elfA	370	51.68		
1v3hA	495	53.54	c.1.8.1	108303
2i75A	320	55.89		
1rpmA	278	59.61	c.45.1.2	32679
2plcA	274	63.03	c.1.18.2	29614
1tca	317	63.06		
3bv0A	437	64.14		
1b1yA	500	66.58	c.1.8.1	28796
3b55A	451	67.02		
2f71A	298	68.05	c.45.1.2	133070
1c9kA	180	68.10	c.37.1.11	32363
1yfoA	302	68.43	c.45.1.2	32681
1npyA	271	68.48	c.2.1.7,c.58.1.5	85995,85996
1surA	215	68.66	c.26.2.2	31620
1bvyF	191	69.08	c.23.5.1	31207
1vjgA	218	70.62	c.23.10.6	100810
1y2qA	143	71.26		
2pa5A	314	72.03		
2bijA	305	75.36		
1g7fA	298	76.12	c.45.1.2	60330
2pbnA	313	77.23		
2plc	274	78.24		
1wq3A	322	81.84		
1larA	575	82.90	c.45.1.2,c.45.1.2	32693,32694
1ytw	306	83.04		
2gt1A	326	84.67		
2rdmA	132	85.09		
2vifA	141	85.84		
2ggsA	273	87.50		
2z1dA	372	87.58		
1wdpA	495	87.73	c.1.8.1	120907
1xjo	284	88.42