# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oucA 142 9.61e-12 2a2kA 175 2.25e-11 1ymkA 175 3.33e-11 c.46.1.1 123699 1qb0A 211 3.37e-11 c.46.1.1 32699 1c25 161 6.25e-11 2hhgA 139 1.42e-10 1gmxA 108 3.57e-10 c.46.1.3 65355 2gwfA 157 5.24e-10 c.46.1.4 135802 1whbA 157 1.16e-09 c.46.1.4 114639 1e0cA 271 5.08e-09 c.46.1.2,c.46.1.2 32717,32718 1yt8A 539 2.69e-08 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2j6pA 152 2.73e-08 1hzmA 154 3.81e-08 c.46.1.1 65975 1uarA 285 6.42e-08 c.46.1.2,c.46.1.2 107762,107763 1t3kA 152 1.24e-07 c.46.1.1 106357 1rhs 296 2.26e-07 1rhsA 296 2.36e-06 c.46.1.2,c.46.1.2 32703,32704 1okgA 373 2.49e-05 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2fsxA 148 3.16e-05 2eg4A 230 4.55e-05 1wv9A 94 0.000701 2cw6A 298 1.799 1lsuA 147 5.212 c.2.1.9 74250 1vpvA 300 5.458 c.119.1.1 113975 1zsqA 528 6.881 b.55.1.8,c.45.1.3 125616,125617 2dt5A 211 11.03 a.4.5.38,c.2.1.12 131708,131709 2r98A 456 13.38 1lw3A 657 16.33 b.55.1.8,c.45.1.3 91152,91153 3bilA 348 16.41 1ydnA 295 17.68 1khhA 198 17.81 c.66.1.16 68615 2hmvA 144 17.93 c.2.1.9 136615 2ejaA 338 19.55 1q9iA 571 20.57 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1lssA 140 21.16 c.2.1.9 74246 1kssA 571 21.27 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1efvA 315 23.22 c.26.2.3,c.31.1.2 31633,31728 1p2hA 571 24.37 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1xcbA 211 24.46 a.4.5.38,c.2.1.12 109552,109553 1ltqA 301 25.37 c.108.1.9,c.37.1.1 78208,78209 2e55A 208 25.99 1t6t1 118 26.10 1t44G 147 27.08 d.109.1.1 106395 1y0pA 571 27.87 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1mgpA 313 28.48 c.119.1.1 79098 1e39A 571 29.46 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 2b9wA 424 29.48 1qgvA 142 30.28 c.47.1.8 33056 1jscA 630 31.17 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1v9sA 208 32.26 c.61.1.1 119894 1qgoA 264 32.56 c.92.1.2 35596 2es7A 142 32.65 c.47.1.20 132314 2ns0A 85 34.17 1xg4A 295 34.88 1t71A 281 36.14 d.159.1.9 112283 2d4qA 257 36.72 2rgyA 290 38.01 1reoA 486 39.13 c.3.1.2,d.16.1.5 97325,97326 1r88A 280 40.31 c.69.1.3 97219 2z3yA 662 40.94 3c5vA 316 41.22 2b82A 211 41.25 c.108.1.12 128057 2ehjA 208 42.46 1i9sA 210 43.54 c.45.1.1 62099 1t64A 377 43.68 c.42.1.2 106543 2i6jA 161 45.07 2fepA 289 45.28 2b4lA 268 45.62 2cftA 298 47.36 1rcqA 357 48.53 b.49.2.2,c.1.6.1 104882,104883 1wlsA 328 48.93 2vhxA 377 49.03 1qjdA 571 49.03 a.138.1.3,c.3.1.4,d.168.1.1 19695,30432,42315 1kk9A 221 49.93 d.115.1.1 77432 1s7zA 117 49.95 a.159.3.1 98715 1byrA 155 49.97 d.136.1.1 41450 2jmpA 107 49.99 1b5qA 472 50.20 c.3.1.2,d.16.1.5 30404,37968 1bykA 255 51.09 c.93.1.1 35706 2vojA 371 52.49 1tjyA 316 52.87 c.93.1.1 107062 1z6nA 167 53.70 c.47.1.1 124530 2rjoA 332 54.26 2c4nA 250 57.94 c.108.1.14 129837 2e7uA 424 59.01 1c3oA 1073 59.01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18562,31491,31681,31682,41526,41527 1bd3A 243 59.39 c.61.1.1 34098 1qjwA 365 61.38 c.6.1.1 30657 2c46A 241 62.81 1rmwA 212 63.54 1k7jA 206 63.58 d.115.1.1 72103 1m64A 571 64.12 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1ghsA 306 65.40 c.1.8.3 28840 1b37B 472 65.61 c.3.1.2,d.16.1.5 30390,37954 2h3hA 313 68.02 1u32A 293 68.04 d.159.1.3 107631 2qvcA 313 69.51 2yrxA 451 71.22 1u9yA 284 72.12 c.61.1.2,c.61.1.2 119655,119656 2eggA 297 72.95 1gg1A 350 73.66 c.1.10.4 29187 1jj2M 186 75.85 c.55.4.1 63098 1hruA 188 76.65 d.115.1.1 40926 1h1nA 305 76.93 c.1.8.3 70855 2uubK 129 76.94 c.55.4.1 139942 1c3pA 375 78.37 c.42.1.2 32606 1vqoN 187 78.57 c.55.4.1 120375 2scuA 288 78.57 c.2.1.8,c.23.4.1 30303,31131 2b5dX 528 78.95 a.8.3.3,c.6.2.4 127886,127887 3brsA 289 79.49 2dy3A 361 80.26 1jk7A 323 80.64 d.159.1.3 63144 2qruA 274 80.79 2hrzA 342 81.64 1fjmA 330 84.66 d.159.1.3 42082 1vr5A 547 86.59 c.94.1.1 120437 1qpzA 340 87.58 a.35.1.5,c.93.1.1 17097,35673 1rsgA 516 88.80 1lj1A 571 89.45 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1uc7A 125 89.46 c.47.1.1 99163