# List of top-scoring protein chains for T0389.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1urhA	280	7.08e-14	c.46.1.2,c.46.1.2	99829,99830
1uarA	285	1.27e-13	c.46.1.2,c.46.1.2	107762,107763
2ifdA	175	8.93e-13		
1cwtA	178	1.06e-12	c.46.1.1	32702
1qb0A	211	1.07e-12	c.46.1.1	32699
1ymkA	175	1.07e-12	c.46.1.1	123699
1c25A	161	1.93e-12	c.46.1.1	32698
2ifvA	175	2.32e-12		
2a2kA	175	5.27e-12		
1e0cA	271	1.45e-11	c.46.1.2,c.46.1.2	32717,32718
1rhsA	296	5.24e-10	c.46.1.2,c.46.1.2	32703,32704
1dp2A	293	5.25e-10	c.46.1.2,c.46.1.2	32705,32706
1rhdA	293	5.27e-10	c.46.1.2,c.46.1.2	32715,32716
1gmxA	108	2.23e-09	c.46.1.3	65355
1hzmA	154	6.65e-09	c.46.1.1	65975
1tq1A	129	7.45e-09	c.46.1.3	107198
2hhgA	139	7.49e-09		
2eg4A	230	1.51e-08		
2oucA	142	3.70e-08		
1qxnA	137	1.45e-07	c.46.1.3	96537
1yt8A	539	1.49e-07	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1okgA	373	2.71e-07	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1t3kA	152	5.16e-07	c.46.1.1	106357
2k0zA	110	1.61e-06		
2j6pA	152	2.49e-06		
1whbA	157	4.21e-06	c.46.1.4	114639
2gwfA	157	5.56e-06	c.46.1.4	135802
2fsxA	148	0.000333		
1wv9A	94	0.001194		
1veeA	134	0.3194		
2cyeA	133	17.71	d.38.1.1	131021
1x31B	404	28.37		
2yvtA	260	36.49		
2dxnA	274	41.32		
2e1qA	1333	42.84		
2hunA	336	42.94		
2e5oA	154	44.25		
2ckjA	1333	45.09		
2qm1A	326	55.15		
1xl3C	92	72.31	a.243.1.1	122104
1ckhA	130	73.82	d.2.1.2	36564
2e3tA	1331	75.00		
1wygA	1331	76.37		
1h2bA	359	83.18	b.35.1.2,c.2.1.1	90543,90544