# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 3.66e-13 c.46.1.4 114639 1e0cA 271 6.43e-13 c.46.1.2,c.46.1.2 32717,32718 1qb0A 211 9.03e-13 c.46.1.1 32699 2hhgA 139 1.91e-12 2oucA 142 4.33e-12 1rhs 296 5.71e-12 1gmxA 108 6.10e-12 c.46.1.3 65355 1t3kA 152 6.32e-12 c.46.1.1 106357 2gwfA 157 1.19e-11 c.46.1.4 135802 1yt8A 539 1.61e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 1.76e-11 c.46.1.2,c.46.1.2 32703,32704 2a2kA 175 1.79e-11 2j6pA 152 2.46e-11 2fsxA 148 3.96e-11 1uarA 285 1.13e-10 c.46.1.2,c.46.1.2 107762,107763 1ymkA 175 1.19e-10 c.46.1.1 123699 1okgA 373 4.15e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 5.89e-09 1wv9A 94 6.25e-08 1bf6A 291 5.872 c.1.9.3 29065 2b4uA 335 6.388 1dkuA 317 7.672 c.61.1.2,c.61.1.2 34118,34119 2fdxA 138 12.04 c.23.5.1 31192 2f46A 156 12.26 2b4pA 334 14.54 1yn9A 169 16.03 1yz4A 160 17.68 1hp1A 516 20.07 d.114.1.1,d.159.1.2 70976,70977 2fafA 608 22.44 1riiA 265 23.38 c.60.1.1 111807 5nulA 138 25.61 c.23.5.1 31191 2hcrA 326 26.82 1khbA 625 26.86 c.91.1.1,c.109.1.1 68606,68607 1u24A 337 27.57 c.45.1.4 112968 2i6jA 161 28.81 1qd1A 325 28.88 d.58.34.1,d.58.34.1 39493,39494 2hxpA 155 29.42 1qhfA 240 30.99 c.60.1.1 33960 1c3pA 375 31.90 c.42.1.2 32606 2az4A 429 33.05 d.157.1.10 127597 1fpzA 212 33.66 c.45.1.1 59976 2j16A 182 35.67 5nul 138 38.16 1mx0A 472 38.36 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1jaeA 471 39.06 b.71.1.1,c.1.8.1 27773,28760 2p4gA 270 39.50 3b55A 451 40.44 2c46A 241 45.73 2fsjA 346 45.73 c.55.1.12,c.55.1.12 134025,134026 1n7hA 381 45.85 c.2.1.2 80250 2r0bA 154 46.16 1rxdA 159 47.15 c.45.1.1 111959 1vmeA 410 47.72 c.23.5.1,d.157.1.3 108893,108894 1zsqA 528 49.32 b.55.1.8,c.45.1.3 125616,125617 2hcmA 164 49.46 1wrmA 165 50.91 1vz0A 230 53.15 a.4.14.1,d.268.1.1 108929,108930 2yzkA 178 54.62 1npyA 271 55.26 c.2.1.7,c.58.1.5 85995,85996 2nt2A 145 56.08 2o4cA 380 56.21 2qahA 303 57.88 1z5vA 474 58.40 1ui0A 205 58.46 c.18.1.2 99411 1wq3A 322 59.40 1zzwA 149 59.76 1h2eA 207 61.18 c.60.1.1 70857 2p4dA 172 62.54 2e0tA 151 63.98 1oi7A 288 64.14 c.2.1.8,c.23.4.1 87049,87050 2h1rA 299 64.27 2q1sA 377 64.99 3bzbA 281 66.19 1b63A 333 66.59 d.14.1.3,d.122.1.2 37566,41107 1oheA 348 69.24 c.45.1.1,c.45.1.1 87013,87014 2cftA 298 71.06 2gcgA 330 72.66 2gxaA 274 75.94 1gnlA 544 76.08 e.26.1.1 70287 2f4dA 184 77.72 1bx1A 314 78.24 b.43.4.2,c.25.1.1 25629,31519 1i9sA 210 78.54 c.45.1.1 62099 4ts1A 319 79.14 c.26.1.1 31565 1e58A 249 79.78 c.60.1.1 59262 2esbA 188 79.91 1r3dA 264 80.11 c.69.1.35 111680 3c5vA 316 80.73 2v5xA 388 80.96 1r61A 207 82.17 c.8.8.1 97138 1oywA 523 82.69 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2z1dA 372 82.82 1y97A 238 82.93 c.55.3.5 122773 2v1xA 591 85.01 1tvmA 113 85.15 2pjzA 263 86.94 3cdxA 354 88.64