# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	4.95e-14	c.46.1.4	114639
1qb0A	211	8.02e-14	c.46.1.1	32699
1e0cA	271	1.55e-13	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	2.74e-13		
2oucA	142	7.95e-13		
1rhs	296	1.17e-12		
1gmxA	108	1.18e-12	c.46.1.3	65355
2a2kA	175	1.87e-12		
1yt8A	539	1.89e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1t3kA	152	2.21e-12	c.46.1.1	106357
2gwfA	157	2.44e-12	c.46.1.4	135802
2j6pA	152	4.32e-12		
1rhsA	296	5.20e-12	c.46.1.2,c.46.1.2	32703,32704
1ymkA	175	1.14e-11	c.46.1.1	123699
2fsxA	148	1.20e-11		
1uarA	285	1.73e-11	c.46.1.2,c.46.1.2	107762,107763
1okgA	373	6.65e-11	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.84e-09		
1wv9A	94	2.19e-08		
1dkuA	317	5.918	c.61.1.2,c.61.1.2	34118,34119
1bf6A	291	9.413	c.1.9.3	29065
2f46A	156	10.09		
2b4uA	335	12.88		
2fdxA	138	13.35	c.23.5.1	31192
2fafA	608	17.38		
1qd1A	325	17.65	d.58.34.1,d.58.34.1	39493,39494
2hcrA	326	18.93		
2az4A	429	21.21	d.157.1.10	127597
1hp1A	516	21.23	d.114.1.1,d.159.1.2	70976,70977
1qhfA	240	21.66	c.60.1.1	33960
1yz4A	160	22.47		
5nulA	138	27.80	c.23.5.1	31191
2i6jA	161	29.40		
1fpzA	212	29.52	c.45.1.1	59976
2b4pA	334	30.19		
1khbA	625	30.43	c.91.1.1,c.109.1.1	68606,68607
2hxpA	155	32.71		
2fsjA	346	32.75	c.55.1.12,c.55.1.12	134025,134026
3bzbA	281	34.48		
1yn9A	169	34.59		
2q1sA	377	34.84		
1riiA	265	35.90	c.60.1.1	111807
1u24A	337	37.51	c.45.1.4	112968
2gxaA	274	40.88		
1jaeA	471	41.26	b.71.1.1,c.1.8.1	27773,28760
1zsqA	528	43.48	b.55.1.8,c.45.1.3	125616,125617
1vmeA	410	44.58	c.23.5.1,d.157.1.3	108893,108894
2j5bA	348	45.81		
1wrmA	165	47.75		
1c3pA	375	48.46	c.42.1.2	32606
2qahA	303	48.80		
1n7hA	381	50.06	c.2.1.2	80250
3b55A	451	50.13		
1h2eA	207	51.00	c.60.1.1	70857
1u0jA	267	51.85	c.37.1.20	107546
2c46A	241	53.95		
2cftA	298	54.36		
5nul	138	56.89		
2h1rA	299	57.46		
2j16A	182	57.57		
1oheA	348	59.44	c.45.1.1,c.45.1.1	87013,87014
2yzkA	178	61.30		
1mx0A	472	61.63	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
2c0rA	362	64.91	c.67.1.4	129604
2p4gA	270	65.98		
2esbA	188	67.67		
2nt2A	145	67.91		
1rxdA	159	68.35	c.45.1.1	111959
2c2xA	281	68.86		
1i9sA	210	74.46	c.45.1.1	62099
2omkA	231	74.54		
2hcmA	164	75.40		
1r3dA	264	75.56	c.69.1.35	111680
2imgA	151	76.08		
2gcgA	330	76.61		
1e58A	249	76.89	c.60.1.1	59262
1t5oA	351	76.89	c.124.1.5	106459
1vhwA	253	76.90	c.56.2.1	100706
1z5vA	474	78.90		
1npyA	271	79.04	c.2.1.7,c.58.1.5	85995,85996
1bx1A	314	80.06	b.43.4.2,c.25.1.1	25629,31519
2pbfA	227	80.14		
4ts1A	319	80.24	c.26.1.1	31565
1zzwA	149	80.77		
1xcbA	211	81.59	a.4.5.38,c.2.1.12	109552,109553
1oi7A	288	81.89	c.2.1.8,c.23.4.1	87049,87050
2gptA	523	84.86		
2e7uA	424	84.99		
2pjzA	263	85.28		
1n2sA	299	89.40	c.2.1.2	79857