# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 9.06e-18 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 7.51e-17 c.46.1.4 114639 1rhs 296 1.27e-16 1qb0A 211 2.02e-16 c.46.1.1 32699 2hhgA 139 2.34e-16 2oucA 142 3.37e-16 1yt8A 539 3.88e-16 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 5.19e-16 c.46.1.3 65355 1rhsA 296 9.04e-16 c.46.1.2,c.46.1.2 32703,32704 1t3kA 152 1.40e-15 c.46.1.1 106357 2j6pA 152 1.44e-15 1uarA 285 5.40e-15 c.46.1.2,c.46.1.2 107762,107763 2a2kA 175 6.22e-15 2gwfA 157 1.30e-14 c.46.1.4 135802 1okgA 373 2.50e-14 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2fsxA 148 2.99e-14 1ymkA 175 5.68e-14 c.46.1.1 123699 2eg4A 230 3.22e-12 1wv9A 94 1.61e-10 2b4uA 335 1.569 2b4pA 334 2.267 1bf6A 291 2.294 c.1.9.3 29065 2p4gA 270 4.065 1u24A 337 5.950 c.45.1.4 112968 2fdxA 138 9.185 c.23.5.1 31192 1dkuA 317 9.708 c.61.1.2,c.61.1.2 34118,34119 1yn9A 169 10.19 5nulA 138 11.47 c.23.5.1 31191 2j5bA 348 12.34 1zsqA 528 15.66 b.55.1.8,c.45.1.3 125616,125617 2f46A 156 16.28 1t2dA 322 18.14 c.2.1.5,d.162.1.1 99084,99085 5nul 138 19.58 2fafA 608 20.52 1v7zA 260 23.88 c.125.1.1 100488 1npyA 271 25.75 c.2.1.7,c.58.1.5 85995,85996 1moqA 368 25.76 c.80.1.1 35302 2aznA 219 26.07 c.71.1.2 127608 1yz4A 160 26.20 2r98A 456 27.14 2hcrA 326 31.25 2yzkA 178 31.75 1r61A 207 34.52 c.8.8.1 97138 1oaoA 674 34.99 e.26.1.2 86744 1g2qA 187 35.74 c.61.1.1 65117 2oa8A 233 35.91 2c46A 241 36.87 1r3dA 264 37.37 c.69.1.35 111680 2e7uA 424 38.73 1oi7A 288 39.02 c.2.1.8,c.23.4.1 87049,87050 1qhfA 240 39.43 c.60.1.1 33960 3b55A 451 40.26 2gxaA 274 41.22 2az4A 429 42.40 d.157.1.10 127597 2hxpA 155 42.80 1oywA 523 43.34 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1vmeA 410 43.36 c.23.5.1,d.157.1.3 108893,108894 1vhwA 253 43.65 c.56.2.1 100706 1hyhA 309 44.61 c.2.1.5,d.162.1.1 30150,42117 1y97A 238 47.71 c.55.3.5 122773 2dplA 308 50.22 2jerA 389 50.93 1wq3A 322 52.29 2gcgA 330 52.64 2j4jA 226 53.39 3bzbA 281 53.43 1gnlA 544 53.59 e.26.1.1 70287 1fpzA 212 53.63 c.45.1.1 59976 1b63A 333 54.72 d.14.1.3,d.122.1.2 37566,41107 1riiA 265 56.31 c.60.1.1 111807 3cggA 195 57.47 2e0tA 151 57.58 1zzwA 149 57.59 2h1rA 299 57.91 1oheA 348 58.11 c.45.1.1,c.45.1.1 87013,87014 2c1iA 431 59.31 c.6.2.3,d.341.1.1 129636,129637 2cybA 323 59.57 1v4vA 376 60.16 c.87.1.3 100313 2q1sA 377 60.75 1lh0A 213 60.85 c.61.1.1 73896 1ui0A 205 62.36 c.18.1.2 99411 4pgaA 337 62.72 c.88.1.1 35565 1u0jA 267 62.73 c.37.1.20 107546 2aeeA 211 63.28 c.61.1.1 126620 2f4dA 184 63.43 2imgA 151 63.94 1l6sA 323 64.26 c.1.10.3 73627 2jh3A 474 64.54 2i6jA 161 64.59 1uxjA 309 67.08 c.2.1.5,d.162.1.1 108112,108113 2r0bA 154 68.18 1fuiA 591 69.75 b.43.2.1,c.85.1.1 25674,35444 2qahA 303 69.91 2b5eA 504 70.18 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1o7jA 327 70.68 c.88.1.1 81140 2esbA 188 70.76 1wrmA 165 70.83 2o4cA 380 71.66 1i9sA 210 73.06 c.45.1.1 62099 1bx1A 314 73.58 b.43.4.2,c.25.1.1 25629,31519 1pq4A 291 73.82 c.92.2.2 94995 1wlsA 328 75.95 1pa1A 310 76.59 c.45.1.2 94404 2v1xA 591 76.70 1t4bA 367 77.62 c.2.1.3,d.81.1.1 106406,106407 1vh0A 161 78.11 c.116.1.3 100626 1orrA 347 78.50 c.2.1.2 93460 2z6rA 265 78.60 2qf2A 624 78.94 1zs9A 261 79.14 c.108.1.22 125600 1n7hA 381 81.14 c.2.1.2 80250 2npnA 251 81.82 1w5qA 337 84.44 2h9aB 310 84.61 2nt2A 145 85.11 1qd1A 325 85.93 d.58.34.1,d.58.34.1 39493,39494 2omkA 231 86.01 2euiA 153 86.02 d.108.1.1 132387 2hcmA 164 87.93 1h2eA 207 88.13 c.60.1.1 70857 2p2vA 288 88.14 2cyaA 364 89.96