# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	6.61e-13	c.46.1.4	114639
1qb0A	211	9.02e-13	c.46.1.1	32699
1e0cA	271	1.20e-12	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	1.38e-12		
1rhs	296	7.56e-12		
1gmxA	108	8.32e-12	c.46.1.3	65355
2oucA	142	9.45e-12		
1t3kA	152	1.03e-11	c.46.1.1	106357
2a2kA	175	1.51e-11		
1yt8A	539	1.81e-11	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2gwfA	157	2.30e-11	c.46.1.4	135802
2j6pA	152	2.59e-11		
2fsxA	148	3.22e-11		
1rhsA	296	3.25e-11	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	1.20e-10	c.46.1.2,c.46.1.2	107762,107763
1ymkA	175	1.30e-10	c.46.1.1	123699
1okgA	373	1.06e-09	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	5.26e-09		
1wv9A	94	1.79e-07		
2b4uA	335	4.634		
1dkuA	317	7.337	c.61.1.2,c.61.1.2	34118,34119
2b4pA	334	8.288		
1bf6A	291	12.08	c.1.9.3	29065
2az4A	429	15.47	d.157.1.10	127597
1qhfA	240	17.44	c.60.1.1	33960
1yz4A	160	17.91		
2i6jA	161	19.59		
2fdxA	138	20.09	c.23.5.1	31192
1yn9A	169	20.34		
2f46A	156	21.76		
2pbfA	227	24.76		
2hcrA	326	26.05		
1hp1A	516	26.61	d.114.1.1,d.159.1.2	70976,70977
1npyA	271	26.94	c.2.1.7,c.58.1.5	85995,85996
1v4vA	376	34.54	c.87.1.3	100313
2fafA	608	35.38		
1h2eA	207	35.69	c.60.1.1	70857
1riiA	265	36.04	c.60.1.1	111807
2p4gA	270	36.31		
1qd1A	325	37.42	d.58.34.1,d.58.34.1	39493,39494
2v1xA	591	41.12		
2c46A	241	41.62		
3bzbA	281	44.82		
2hxpA	155	46.47		
1c3pA	375	47.14	c.42.1.2	32606
1mx0A	472	48.07	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
1fpzA	212	48.35	c.45.1.1	59976
1rxdA	159	49.80	c.45.1.1	111959
1u24A	337	53.08	c.45.1.4	112968
1oywA	523	54.67	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1oi7A	288	55.21	c.2.1.8,c.23.4.1	87049,87050
2euiA	153	58.63	d.108.1.1	132387
1u0jA	267	60.95	c.37.1.20	107546
1e58A	249	61.07	c.60.1.1	59262
2p4dA	172	62.31		
1r3dA	264	64.24	c.69.1.35	111680
1zzwA	149	64.87		
1wrmA	165	65.26		
2jh3A	474	66.31		
1oheA	348	66.70	c.45.1.1,c.45.1.1	87013,87014
2h1rA	299	68.69		
1i9sA	210	70.18	c.45.1.1	62099
1zsqA	528	70.92	b.55.1.8,c.45.1.3	125616,125617
2nt2A	145	71.48		
1tib	269	71.73		
1jaeA	471	72.49	b.71.1.1,c.1.8.1	27773,28760
2ieaA	886	74.61	c.36.1.6,c.36.1.10,c.48.1.1	137294,137295,137296
5nul	138	75.20		
1wywA	230	75.66		
1hyhA	309	77.11	c.2.1.5,d.162.1.1	30150,42117
2j16A	182	77.74		
2oa8A	233	78.77		
2yzkA	178	78.87		
1uwcA	261	79.84	c.69.1.17	100101
2i6cA	160	80.69	d.108.1.1	137095
2omkA	231	81.89		
5nulA	138	84.25	c.23.5.1	31191
1moqA	368	84.38	c.80.1.1	35302
2hk9A	275	84.85		
2esbA	188	85.09		
1lh0A	213	86.83	c.61.1.1	73896
2ganA	190	87.09	d.108.1.1	134889
3brqA	296	87.19		
2hcmA	164	87.47		
1bx1A	314	88.59	b.43.4.2,c.25.1.1	25629,31519
1c4oA	664	89.45	c.37.1.19,c.37.1.19	32415,32416
2r0bA	154	89.57		
1vhwA	253	89.61	c.56.2.1	100706
2r98A	456	89.91