# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 2.15e-12 c.46.1.4 114639 1qb0A 211 2.29e-12 c.46.1.1 32699 1e0cA 271 2.40e-12 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 4.02e-12 1rhs 296 1.83e-11 1t3kA 152 2.08e-11 c.46.1.1 106357 1gmxA 108 2.35e-11 c.46.1.3 65355 2oucA 142 2.45e-11 2a2kA 175 3.25e-11 1yt8A 539 4.97e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2gwfA 157 5.00e-11 c.46.1.4 135802 2j6pA 152 5.64e-11 1rhsA 296 6.71e-11 c.46.1.2,c.46.1.2 32703,32704 2fsxA 148 7.46e-11 1ymkA 175 2.74e-10 c.46.1.1 123699 1uarA 285 2.89e-10 c.46.1.2,c.46.1.2 107762,107763 1okgA 373 2.76e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.35e-08 1wv9A 94 3.88e-07 2b4uA 335 4.094 1dkuA 317 6.881 c.61.1.2,c.61.1.2 34118,34119 2b4pA 334 10.05 2fdxA 138 11.55 c.23.5.1 31192 2f46A 156 14.57 2az4A 429 14.72 d.157.1.10 127597 1yz4A 160 14.88 1bf6A 291 17.49 c.1.9.3 29065 2hcrA 326 19.12 2fafA 608 22.50 2i6jA 161 23.20 1qhfA 240 24.53 c.60.1.1 33960 1npyA 271 29.38 c.2.1.7,c.58.1.5 85995,85996 1yn9A 169 31.61 2pbfA 227 31.69 2p4gA 270 34.78 2hxpA 155 35.48 1c3pA 375 35.58 c.42.1.2 32606 5nulA 138 38.05 c.23.5.1 31191 1hp1A 516 40.77 d.114.1.1,d.159.1.2 70976,70977 5nul 138 41.66 1riiA 265 42.12 c.60.1.1 111807 2v1xA 591 43.10 1fpzA 212 44.01 c.45.1.1 59976 1oywA 523 44.24 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1h2eA 207 46.88 c.60.1.1 70857 2p4dA 172 47.14 1wrmA 165 47.49 1rxdA 159 49.75 c.45.1.1 111959 2j16A 182 51.93 2h1rA 299 53.02 1v4vA 376 55.54 c.87.1.3 100313 2euiA 153 55.80 d.108.1.1 132387 1khbA 625 55.84 c.91.1.1,c.109.1.1 68606,68607 1zzwA 149 56.29 1oheA 348 56.57 c.45.1.1,c.45.1.1 87013,87014 1oi7A 288 56.80 c.2.1.8,c.23.4.1 87049,87050 2nt2A 145 57.34 1vmeA 410 58.38 c.23.5.1,d.157.1.3 108893,108894 2jh3A 474 58.62 1c4oA 664 59.60 c.37.1.19,c.37.1.19 32415,32416 1mx0A 472 60.56 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2hcmA 164 61.10 2c46A 241 61.34 2r0bA 154 62.52 1n7hA 381 64.69 c.2.1.2 80250 1qd1A 325 64.93 d.58.34.1,d.58.34.1 39493,39494 3bzbA 281 65.75 1ui0A 205 65.80 c.18.1.2 99411 1zsqA 528 66.50 b.55.1.8,c.45.1.3 125616,125617 1c9kA 180 67.97 c.37.1.11 32363 1bx1A 314 70.83 b.43.4.2,c.25.1.1 25629,31519 2r98A 456 72.15 1u24A 337 72.36 c.45.1.4 112968 2r6hA 290 75.45 1u0jA 267 75.49 c.37.1.20 107546 1wywA 230 76.63 1kgsA 225 76.73 a.4.6.1,c.23.1.1 68596,68597 1jaeA 471 77.22 b.71.1.1,c.1.8.1 27773,28760 3brqA 296 79.26 1e58A 249 82.40 c.60.1.1 59262 2yzkA 178 82.47 1hyhA 309 83.53 c.2.1.5,d.162.1.1 30150,42117 2fh7A 595 84.83 1i9sA 210 85.15 c.45.1.1 62099 1r3dA 264 85.37 c.69.1.35 111680 2oa8A 233 87.50 1huxA 270 88.25 c.55.1.5 61278 1mb3A 124 88.46 c.23.1.1 78907 2q1sA 377 88.83 1lh0A 213 89.52 c.61.1.1 73896 2esbA 188 89.87