# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 9.59e-13 c.46.1.4 114639 1qb0A 211 1.07e-12 c.46.1.1 32699 1e0cA 271 1.41e-12 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 2.42e-12 1t3kA 152 1.25e-11 c.46.1.1 106357 2oucA 142 1.27e-11 1rhs 296 1.28e-11 1gmxA 108 1.48e-11 c.46.1.3 65355 2a2kA 175 1.96e-11 2gwfA 157 2.62e-11 c.46.1.4 135802 1yt8A 539 3.08e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2j6pA 152 3.65e-11 2fsxA 148 4.52e-11 1rhsA 296 5.17e-11 c.46.1.2,c.46.1.2 32703,32704 1uarA 285 1.60e-10 c.46.1.2,c.46.1.2 107762,107763 1ymkA 175 1.94e-10 c.46.1.1 123699 1okgA 373 1.55e-09 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 8.53e-09 1wv9A 94 2.40e-07 2b4uA 335 4.809 1dkuA 317 7.270 c.61.1.2,c.61.1.2 34118,34119 2b4pA 334 8.096 2az4A 429 10.43 d.157.1.10 127597 1bf6A 291 10.83 c.1.9.3 29065 2fdxA 138 13.16 c.23.5.1 31192 1yz4A 160 16.97 1qhfA 240 17.75 c.60.1.1 33960 2f46A 156 18.40 2i6jA 161 22.67 1hp1A 516 22.67 d.114.1.1,d.159.1.2 70976,70977 2hcrA 326 24.44 1yn9A 169 25.27 2fafA 608 28.27 1qd1A 325 30.79 d.58.34.1,d.58.34.1 39493,39494 2v1xA 591 31.66 1h2eA 207 31.84 c.60.1.1 70857 1riiA 265 34.24 c.60.1.1 111807 1npyA 271 34.89 c.2.1.7,c.58.1.5 85995,85996 1oywA 523 36.28 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2pbfA 227 37.98 5nulA 138 38.36 c.23.5.1 31191 2p4gA 270 38.93 1mx0A 472 40.62 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1oi7A 288 42.14 c.2.1.8,c.23.4.1 87049,87050 1v4vA 376 42.89 c.87.1.3 100313 2hxpA 155 44.58 1c3pA 375 45.70 c.42.1.2 32606 1fpzA 212 46.27 c.45.1.1 59976 5nul 138 48.22 2c46A 241 50.92 1tib 269 53.30 3bzbA 281 53.78 1u24A 337 54.53 c.45.1.4 112968 2oa8A 233 55.81 1rxdA 159 55.98 c.45.1.1 111959 1wywA 230 56.34 2euiA 153 56.45 d.108.1.1 132387 2p4dA 172 56.64 1zsqA 528 57.68 b.55.1.8,c.45.1.3 125616,125617 1oheA 348 57.82 c.45.1.1,c.45.1.1 87013,87014 2h1rA 299 58.35 1u0jA 267 58.56 c.37.1.20 107546 1r3dA 264 60.14 c.69.1.35 111680 1e58A 249 60.59 c.60.1.1 59262 1n7hA 381 61.34 c.2.1.2 80250 1wrmA 165 61.89 1bx1A 314 62.49 b.43.4.2,c.25.1.1 25629,31519 2jh3A 474 63.68 1zzwA 149 64.81 2j16A 182 64.86 1kgsA 225 67.71 a.4.6.1,c.23.1.1 68596,68597 2nt2A 145 68.53 3brqA 296 68.77 1vmeA 410 69.59 c.23.5.1,d.157.1.3 108893,108894 2qahA 303 70.62 1khbA 625 72.57 c.91.1.1,c.109.1.1 68606,68607 1uwcA 261 74.84 c.69.1.17 100101 1ui0A 205 75.99 c.18.1.2 99411 2yzkA 178 77.31 1jaeA 471 78.33 b.71.1.1,c.1.8.1 27773,28760 2hcmA 164 79.82 1c4oA 664 80.44 c.37.1.19,c.37.1.19 32415,32416 2gxaA 274 80.98 3b55A 451 83.69 1c9kA 180 85.26 c.37.1.11 32363 1v7zA 260 86.26 c.125.1.1 100488 2omkA 231 86.84 2cntA 160 87.03 2v5xA 388 88.31 1lh0A 213 88.37 c.61.1.1 73896 2hk9A 275 88.40 1hyhA 309 88.84 c.2.1.5,d.162.1.1 30150,42117