# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 6.20e-17 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 9.06e-17 c.46.1.4 114639 1qb0A 211 1.56e-16 c.46.1.1 32699 2hhgA 139 3.84e-16 2j6pA 152 5.14e-16 2oucA 142 1.11e-15 1rhs 296 1.19e-15 1gmxA 108 1.27e-15 c.46.1.3 65355 1rhsA 296 2.00e-15 c.46.1.2,c.46.1.2 32703,32704 1t3kA 152 2.08e-15 c.46.1.1 106357 2a2kA 175 4.13e-15 1yt8A 539 6.74e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2gwfA 157 2.09e-14 c.46.1.4 135802 2fsxA 148 2.37e-14 1ymkA 175 8.05e-14 c.46.1.1 123699 1uarA 285 9.57e-14 c.46.1.2,c.46.1.2 107762,107763 1okgA 373 2.24e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.08e-11 1wv9A 94 5.15e-10 1dkuA 317 2.975 c.61.1.2,c.61.1.2 34118,34119 1bf6A 291 3.665 c.1.9.3 29065 2b4uA 335 4.434 2f46A 156 4.782 2fafA 608 6.107 2hcrA 326 6.276 1zsqA 528 6.860 b.55.1.8,c.45.1.3 125616,125617 2b4pA 334 9.685 2iw0A 254 10.53 c.6.2.3 137737 1yn9A 169 11.13 2i6jA 161 14.70 1oheA 348 20.67 c.45.1.1,c.45.1.1 87013,87014 1nnsA 326 22.21 c.88.1.1 85910 5nul 138 24.32 2c46A 241 25.25 2f4dA 184 26.28 2r0bA 154 28.23 1u24A 337 28.81 c.45.1.4 112968 1zzwA 149 29.12 1npyA 271 33.95 c.2.1.7,c.58.1.5 85995,85996 1qd1A 325 36.72 d.58.34.1,d.58.34.1 39493,39494 1vhrA 184 37.03 c.45.1.1 32651 1fpzA 212 38.76 c.45.1.1 59976 1mv8A 436 39.53 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1khbA 625 41.06 c.91.1.1,c.109.1.1 68606,68607 2cftA 298 41.30 1vl2A 421 44.17 c.26.2.1,d.210.1.1 108708,108709 2hxpA 155 45.24 1pswA 348 45.25 c.87.1.7 88287 4pgaA 337 46.44 c.88.1.1 35565 2aeeA 211 46.69 c.61.1.1 126620 1umdB 324 48.31 c.36.1.7,c.48.1.2 99600,99601 1zc0A 309 48.88 1u9yA 284 49.12 c.61.1.2,c.61.1.2 119655,119656 1d5rA 324 49.26 b.7.1.1,c.45.1.1 23181,32697 2imgA 151 50.40 5nulA 138 50.69 c.23.5.1 31191 2c1iA 431 54.11 c.6.2.3,d.341.1.1 129636,129637 1zs9A 261 56.71 c.108.1.22 125600 1o7jA 327 56.72 c.88.1.1 81140 2h1rA 299 57.76 1ylhA 560 58.90 2c71A 216 59.25 c.6.2.3 130017 2yzkA 178 59.91 1qb7A 236 60.41 c.61.1.1 34087 1v9sA 208 61.71 c.61.1.1 119894 1oboA 169 61.95 c.23.5.1 86776 2p4dA 172 63.75 1uwcA 261 63.77 c.69.1.17 100101 1z85A 234 64.13 1r61A 207 66.25 c.8.8.1 97138 2fh7A 595 68.48 2egvA 229 70.16 1yz4A 160 70.53 2nt2A 145 71.05 1vmeA 410 71.93 c.23.5.1,d.157.1.3 108893,108894 1rxdA 159 72.77 c.45.1.1 111959 1v4vA 376 72.78 c.87.1.3 100313 1t5oA 351 72.90 c.124.1.5 106459 1dbwA 126 73.63 c.23.1.1 31095 2a67A 167 74.92 1n7hA 381 75.78 c.2.1.2 80250 2q1sA 377 76.54 2shpA 525 76.87 c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1k92A 455 77.79 c.26.2.1,d.210.1.1 68325,68326 1tibA 269 78.83 c.69.1.17 34738 1v7zA 260 80.24 c.125.1.1 100488 2omkA 231 80.81 1i9sA 210 81.66 c.45.1.1 62099 1o6dA 163 82.55 c.116.1.3 92567 1xgkA 352 83.10 c.2.1.2 115286 2nrhA 219 84.35 c.55.1.13,c.55.1.13 138523,138524 2fdxA 138 85.01 c.23.5.1 31192 1d2fA 390 89.48 c.67.1.3 34411