# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	1.69e-15	c.46.1.4	114639
1e0cA	271	2.51e-15	c.46.1.2,c.46.1.2	32717,32718
1qb0A	211	4.19e-15	c.46.1.1	32699
2hhgA	139	9.87e-15		
2oucA	142	2.26e-14		
1t3kA	152	3.07e-14	c.46.1.1	106357
1gmxA	108	4.89e-14	c.46.1.3	65355
1rhs	296	5.04e-14		
2j6pA	152	8.18e-14		
1yt8A	539	1.12e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2a2kA	175	1.15e-13		
2gwfA	157	1.19e-13	c.46.1.4	135802
1rhsA	296	1.68e-13	c.46.1.2,c.46.1.2	32703,32704
2fsxA	148	3.03e-13		
1ymkA	175	1.46e-12	c.46.1.1	123699
1uarA	285	2.33e-12	c.46.1.2,c.46.1.2	107762,107763
1okgA	373	5.90e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	7.76e-11		
1wv9A	94	4.50e-09		
2b4uA	335	1.879		
1bf6A	291	4.301	c.1.9.3	29065
2b4pA	334	5.246		
1dkuA	317	8.253	c.61.1.2,c.61.1.2	34118,34119
1yn9A	169	8.390		
2fdxA	138	11.84	c.23.5.1	31192
5nul	138	13.39		
1yz4A	160	14.28		
1u24A	337	14.79	c.45.1.4	112968
2hcrA	326	15.81		
2f46A	156	16.12		
1qd1A	325	21.05	d.58.34.1,d.58.34.1	39493,39494
2fafA	608	22.53		
5nulA	138	24.61	c.23.5.1	31191
2az4A	429	24.88	d.157.1.10	127597
2i6jA	161	28.84		
1mx0A	472	29.89	a.156.1.3,d.14.1.3,d.122.1.2	79618,79619,79620
1oi7A	288	32.15	c.2.1.8,c.23.4.1	87049,87050
2r0bA	154	33.13		
1wrmA	165	34.69		
2hxpA	155	36.09		
1qhfA	240	37.96	c.60.1.1	33960
2hcmA	164	40.22		
2f4dA	184	40.63		
1zzwA	149	41.00		
2e0tA	151	41.67		
1vhrA	184	42.37	c.45.1.1	32651
1fpzA	212	44.89	c.45.1.1	59976
2j16A	182	44.96		
2j4jA	226	47.09		
2omkA	231	48.44		
2nt2A	145	48.90		
1khbA	625	48.99	c.91.1.1,c.109.1.1	68606,68607
3b55A	451	51.23		
1r3dA	264	52.48	c.69.1.35	111680
2c46A	241	53.14		
1riiA	265	53.60	c.60.1.1	111807
2p4gA	270	56.45		
1b63A	333	58.10	d.14.1.3,d.122.1.2	37566,41107
1gnlA	544	63.36	e.26.1.1	70287
2p4dA	172	63.43		
1oheA	348	66.41	c.45.1.1,c.45.1.1	87013,87014
1vmeA	410	69.34	c.23.5.1,d.157.1.3	108893,108894
2esbA	188	69.80		
1hp1A	516	70.46	d.114.1.1,d.159.1.2	70976,70977
1h2eA	207	71.48	c.60.1.1	70857
1r26A	125	72.68	c.47.1.1	96847
2eplX	627	73.33		
1y97A	238	74.51	c.55.3.5	122773
1oboA	169	74.90	c.23.5.1	86776
1r61A	207	75.84	c.8.8.1	97138
2iw0A	254	78.33	c.6.2.3	137737
1pq4A	291	79.73	c.92.2.2	94995
2imgA	151	80.49		
2ozlB	341	80.60	c.36.1.7,c.48.1.2	139447,139448
1ui0A	205	80.76	c.18.1.2	99411
1zsqA	528	81.88	b.55.1.8,c.45.1.3	125616,125617
1bx1A	314	83.24	b.43.4.2,c.25.1.1	25629,31519
1i9sA	210	83.54	c.45.1.1	62099
1tvmA	113	85.84		
2fh7A	595	87.30