# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 3.21e-17 c.46.1.4 114639 1qb0A 211 8.70e-17 c.46.1.1 32699 1e0cA 271 8.81e-17 c.46.1.2,c.46.1.2 32717,32718 2oucA 142 9.32e-17 2hhgA 139 1.45e-16 1t3kA 152 2.54e-16 c.46.1.1 106357 1yt8A 539 4.72e-16 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2j6pA 152 9.38e-16 1gmxA 108 1.14e-15 c.46.1.3 65355 2gwfA 157 2.04e-15 c.46.1.4 135802 1rhs 296 2.64e-15 1uarA 285 3.82e-15 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 1.41e-14 2a2kA 175 1.44e-14 1okgA 373 3.83e-14 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1rhsA 296 5.29e-14 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 1.27e-13 c.46.1.1 123699 2eg4A 230 2.03e-12 1wv9A 94 2.68e-10 1v4vA 376 1.993 c.87.1.3 100313 2az4A 429 2.493 d.157.1.10 127597 1sffA 426 2.769 c.67.1.4 105482 1dkuA 317 3.251 c.61.1.2,c.61.1.2 34118,34119 1uteA 313 3.515 d.159.1.1 42078 1qhfA 240 3.907 c.60.1.1 33960 1bf6A 291 4.379 c.1.9.3 29065 1jaeA 471 4.397 b.71.1.1,c.1.8.1 27773,28760 2b4uA 335 5.057 5nul 138 6.584 2f46A 156 7.387 1yn9A 169 7.561 1u24A 337 7.567 c.45.1.4 112968 2b4pA 334 7.737 5nulA 138 8.053 c.23.5.1 31191 2fdxA 138 8.967 c.23.5.1 31192 2j5bA 348 9.553 1yz4A 160 11.25 2i6jA 161 17.28 1vmeA 410 17.96 c.23.5.1,d.157.1.3 108893,108894 1xf1A 926 19.20 2j4jA 226 19.34 2eplX 627 19.46 1c3pA 375 21.79 c.42.1.2 32606 1w5qA 337 21.98 1y3nA 490 22.02 c.94.1.1 122597 1vhrA 184 24.74 c.45.1.1 32651 2p4gA 270 25.02 2gcgA 330 25.22 2o1eA 312 25.42 1udcA 338 25.89 c.2.1.2 29785 2qahA 303 26.49 2aznA 219 26.52 c.71.1.2 127608 1wrmA 165 27.17 2hxpA 155 27.53 2hoeA 380 28.34 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1qd1A 325 28.97 d.58.34.1,d.58.34.1 39493,39494 2j16A 182 29.15 2v6oA 596 30.09 2e0tA 151 30.18 1riiA 265 31.36 c.60.1.1 111807 1pq4A 291 31.93 c.92.2.2 94995 2vchA 480 32.20 1lldA 319 32.30 c.2.1.5,d.162.1.1 30177,42144 1r6dA 337 32.90 c.2.1.2 97148 2f4dA 184 34.85 1u0jA 267 35.29 c.37.1.20 107546 2pjzA 263 35.40 2nxwA 565 36.32 2nt2A 145 36.32 2ez9A 603 36.42 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 1oboA 169 37.33 c.23.5.1 86776 2hcmA 164 37.42 2r0bA 154 37.47 2c46A 241 39.15 1zzwA 149 39.76 1v7zA 260 40.21 c.125.1.1 100488 2yzkA 178 41.76 2gxaA 274 42.66 1qnaA 200 42.98 d.129.1.1,d.129.1.1 41226,41227 1t64A 377 43.55 c.42.1.2 106543 2og2A 359 45.17 1i9sA 210 45.98 c.45.1.1 62099 2pqpA 421 46.36 1zsqA 528 46.36 b.55.1.8,c.45.1.3 125616,125617 1o6dA 163 47.43 c.116.1.3 92567 2ax3A 502 47.52 c.72.1.4,c.104.1.1 127477,127478 1cnvA 299 49.10 c.1.8.5 28989 1lh0A 213 49.14 c.61.1.1 73896 2cxaA 256 49.38 d.108.1.6 130993 2h1vA 310 51.50 1z7xW 461 52.17 c.10.1.1 124675 1hyhA 309 52.34 c.2.1.5,d.162.1.1 30150,42117 1r61A 207 52.47 c.8.8.1 97138 1fpzA 212 53.91 c.45.1.1 59976 2om6A 235 55.28 2h1rA 299 55.83 2a5lA 200 57.43 c.23.5.8 126176 1oi7A 288 57.66 c.2.1.8,c.23.4.1 87049,87050 1h2eA 207 59.06 c.60.1.1 70857 3c10A 423 59.47 1t2dA 322 59.51 c.2.1.5,d.162.1.1 99084,99085 2pbfA 227 61.03 1idkA 359 61.95 b.80.1.2 28025 2qzuA 491 62.15 1c4oA 664 63.13 c.37.1.19,c.37.1.19 32415,32416 1ag9A 175 63.29 c.23.5.1 31178 1tfr 305 63.61 1kkoA 413 63.65 c.1.11.2,d.54.1.1 68675,68676 1oaoA 674 64.21 e.26.1.2 86744 2nvrA 423 64.91 1ps9A 671 65.46 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1dliA 402 66.50 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1st9A 143 66.63 c.47.1.10 98987 2p4dA 172 66.86 1ui0A 205 67.13 c.18.1.2 99411 1eq2A 310 68.90 c.2.1.2 29814 2ob3A 330 69.03 2ghrA 302 71.92 c.23.16.8 135208 1vz0A 230 72.84 a.4.14.1,d.268.1.1 108929,108930 1tvmA 113 72.91 1cexA 214 73.03 c.69.1.30 31285 2p6pA 384 74.02 1vpdA 299 74.55 a.100.1.1,c.2.1.6 113951,113952 1y97A 238 76.08 c.55.3.5 122773 1ozhA 566 76.26 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2imgA 151 76.90 1dbfA 127 78.07 d.79.1.2 39761 2oodA 475 78.22 2ganA 190 78.28 d.108.1.1 134889 1inpA 400 78.38 e.7.1.1 42972 2arkA 188 78.40 c.23.5.8 127202 1pg4A 652 78.69 e.23.1.1 88067 1fxxA 482 78.93 c.55.3.5 33726 1ns5A 155 80.60 c.116.1.3 80705 2npnA 251 81.88 2gsjA 271 84.69 2f9sA 151 85.44 c.47.1.10 133168 1wy7A 207 85.56 c.66.1.32 121433 1eu8A 409 86.06 c.94.1.1 59502 1cznA 169 87.58 c.23.5.1 31181 1mb3A 124 88.00 c.23.1.1 78907 1bx1A 314 88.51 b.43.4.2,c.25.1.1 25629,31519 1pa1A 310 89.29 c.45.1.2 94404