# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e0cA 271 7.87e-15 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 8.98e-15 c.46.1.4 114639 1qb0A 211 1.34e-14 c.46.1.1 32699 2hhgA 139 3.65e-14 2oucA 142 4.81e-14 1rhs 296 7.74e-14 1t3kA 152 1.07e-13 c.46.1.1 106357 1gmxA 108 1.12e-13 c.46.1.3 65355 2j6pA 152 2.14e-13 1rhsA 296 2.36e-13 c.46.1.2,c.46.1.2 32703,32704 1yt8A 539 2.83e-13 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2gwfA 157 3.10e-13 c.46.1.4 135802 2a2kA 175 3.42e-13 2fsxA 148 5.99e-13 1ymkA 175 3.06e-12 c.46.1.1 123699 1uarA 285 4.92e-12 c.46.1.2,c.46.1.2 107762,107763 1okgA 373 8.92e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.81e-10 1wv9A 94 7.59e-09 2b4uA 335 2.276 1bf6A 291 2.334 c.1.9.3 29065 2b4pA 334 6.882 1dkuA 317 7.265 c.61.1.2,c.61.1.2 34118,34119 2fdxA 138 10.01 c.23.5.1 31192 1yn9A 169 10.10 2hcrA 326 10.72 5nul 138 11.70 1yz4A 160 13.87 2f46A 156 15.24 2fafA 608 16.53 5nulA 138 18.05 c.23.5.1 31191 2az4A 429 20.98 d.157.1.10 127597 1u24A 337 21.68 c.45.1.4 112968 2i6jA 161 21.86 1oi7A 288 22.07 c.2.1.8,c.23.4.1 87049,87050 1qd1A 325 26.44 d.58.34.1,d.58.34.1 39493,39494 1mx0A 472 31.25 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1wrmA 165 32.02 1vhrA 184 33.23 c.45.1.1 32651 2hxpA 155 33.37 2f4dA 184 33.39 1fpzA 212 34.47 c.45.1.1 59976 2r0bA 154 34.74 1zzwA 149 34.86 2j16A 182 37.83 1khbA 625 38.63 c.91.1.1,c.109.1.1 68606,68607 2p4gA 270 38.76 2hcmA 164 39.01 2omkA 231 40.66 2e0tA 151 41.82 3b55A 451 46.05 1bx1A 314 46.84 b.43.4.2,c.25.1.1 25629,31519 1hp1A 516 46.85 d.114.1.1,d.159.1.2 70976,70977 2c46A 241 48.78 2nt2A 145 49.31 2j4jA 226 49.44 1r3dA 264 51.74 c.69.1.35 111680 1oheA 348 57.90 c.45.1.1,c.45.1.1 87013,87014 1n7hA 381 58.69 c.2.1.2 80250 1oboA 169 59.00 c.23.5.1 86776 1u0jA 267 59.35 c.37.1.20 107546 1c3pA 375 59.60 c.42.1.2 32606 2esbA 188 62.24 1qhfA 240 64.55 c.60.1.1 33960 2gxaA 274 66.66 2p4dA 172 66.78 2eplX 627 66.79 1npyA 271 68.09 c.2.1.7,c.58.1.5 85995,85996 1vmeA 410 68.36 c.23.5.1,d.157.1.3 108893,108894 1zsqA 528 68.74 b.55.1.8,c.45.1.3 125616,125617 1r61A 207 70.25 c.8.8.1 97138 1b63A 333 70.80 d.14.1.3,d.122.1.2 37566,41107 1pq4A 291 71.25 c.92.2.2 94995 1gnlA 544 72.42 e.26.1.1 70287 1jb9A 316 73.55 b.43.4.2,c.25.1.1 62840,62841 2ozlB 341 73.87 c.36.1.7,c.48.1.2 139447,139448 1i9sA 210 75.21 c.45.1.1 62099 1umdB 324 75.46 c.36.1.7,c.48.1.2 99600,99601 1riiA 265 76.80 c.60.1.1 111807 2iw0A 254 78.21 c.6.2.3 137737 2c1iA 431 83.10 c.6.2.3,d.341.1.1 129636,129637 1r26A 125 83.74 c.47.1.1 96847 1v7zA 260 86.77 c.125.1.1 100488 2e7uA 424 87.91 1vhwA 253 89.08 c.56.2.1 100706 2imgA 151 89.43