# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 5.72e-17 c.46.1.4 114639 1qb0A 211 3.82e-16 c.46.1.1 32699 1e0cA 271 8.85e-16 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 9.78e-16 2oucA 142 1.86e-15 1t3kA 152 2.67e-15 c.46.1.1 106357 1gmxA 108 7.84e-15 c.46.1.3 65355 2gwfA 157 8.55e-15 c.46.1.4 135802 2j6pA 152 1.54e-14 2a2kA 175 1.75e-14 1rhs 296 2.34e-14 1yt8A 539 3.04e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2fsxA 148 4.52e-14 1rhsA 296 8.82e-14 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 1.97e-13 c.46.1.1 123699 1uarA 285 5.04e-13 c.46.1.2,c.46.1.2 107762,107763 1okgA 373 2.20e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 4.81e-11 1wv9A 94 8.67e-10 1bf6A 291 9.602 c.1.9.3 29065 1dkuA 317 9.630 c.61.1.2,c.61.1.2 34118,34119 1qd1A 325 9.758 d.58.34.1,d.58.34.1 39493,39494 2b4uA 335 10.18 1qhfA 240 10.68 c.60.1.1 33960 2fdxA 138 16.42 c.23.5.1 31192 2b4pA 334 18.54 2fafA 608 19.98 1u24A 337 20.21 c.45.1.4 112968 1yz4A 160 20.61 1yn9A 169 25.71 1bx1A 314 26.00 b.43.4.2,c.25.1.1 25629,31519 1mx0A 472 26.87 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1riiA 265 27.75 c.60.1.1 111807 2j5bA 348 28.48 2hxpA 155 28.61 2f46A 156 30.04 5nulA 138 31.80 c.23.5.1 31191 2az4A 429 33.66 d.157.1.10 127597 2hcrA 326 35.73 2i6jA 161 40.68 1e58A 249 42.56 c.60.1.1 59262 1khbA 625 44.92 c.91.1.1,c.109.1.1 68606,68607 1g2qA 187 51.11 c.61.1.1 65117 2gxaA 274 52.75 1ui0A 205 53.40 c.18.1.2 99411 1fpzA 212 54.02 c.45.1.1 59976 5nul 138 54.42 2cntA 160 54.84 2j16A 182 55.12 2q0dA 353 55.58 1jaeA 471 56.01 b.71.1.1,c.1.8.1 27773,28760 3cdxA 354 57.83 1h2eA 207 59.21 c.60.1.1 70857 1wywA 230 60.42 1b63A 333 60.80 d.14.1.3,d.122.1.2 37566,41107 1jb9A 316 64.89 b.43.4.2,c.25.1.1 62840,62841 2nt2A 145 68.38 2p4dA 172 68.72 1zzwA 149 70.34 2c71A 216 72.74 c.6.2.3 130017 1zsqA 528 73.82 b.55.1.8,c.45.1.3 125616,125617 1oi7A 288 73.86 c.2.1.8,c.23.4.1 87049,87050 1wrmA 165 74.38 1moqA 368 75.55 c.80.1.1 35302 2c46A 241 76.01 2v1xA 591 77.81 2idaA 102 78.54 1qsmA 152 79.04 d.108.1.1 40808 3eipA 84 80.15 d.26.2.1 38434 2d3yA 219 81.08 3b55A 451 81.36 2oa8A 233 82.21 2qahA 303 82.43 2fh7A 595 82.81 1wq3A 322 82.87 2iw0A 254 83.20 c.6.2.3 137737 1fndA 314 83.40 b.43.4.2,c.25.1.1 25626,31516 1r61A 207 83.82 c.8.8.1 97138 2euiA 153 84.93 d.108.1.1 132387 1u0jA 267 85.88 c.37.1.20 107546 2c1iA 431 86.13 c.6.2.3,d.341.1.1 129636,129637 2h1vA 310 86.72 2pbfA 227 87.43 1nslA 184 88.00 d.108.1.1 86137 2hcmA 164 89.47 1y97A 238 89.66 c.55.3.5 122773 1vz0A 230 89.75 a.4.14.1,d.268.1.1 108929,108930