# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 4.22e-16 c.46.1.4 114639 1qb0A 211 1.41e-15 c.46.1.1 32699 1e0cA 271 1.54e-15 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 1.84e-15 2oucA 142 3.79e-15 1t3kA 152 1.10e-14 c.46.1.1 106357 1gmxA 108 1.39e-14 c.46.1.3 65355 1rhs 296 1.71e-14 2j6pA 152 2.97e-14 2a2kA 175 3.53e-14 1yt8A 539 4.99e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2gwfA 157 6.15e-14 c.46.1.4 135802 1rhsA 296 7.00e-14 c.46.1.2,c.46.1.2 32703,32704 2fsxA 148 9.13e-14 1ymkA 175 3.34e-13 c.46.1.1 123699 1uarA 285 6.10e-13 c.46.1.2,c.46.1.2 107762,107763 1okgA 373 2.21e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 4.98e-11 1wv9A 94 1.53e-09 2b4uA 335 3.715 1bf6A 291 5.298 c.1.9.3 29065 1dkuA 317 7.093 c.61.1.2,c.61.1.2 34118,34119 2fdxA 138 7.164 c.23.5.1 31192 1yz4A 160 10.46 2b4pA 334 11.61 1qhfA 240 13.15 c.60.1.1 33960 1yn9A 169 14.91 1u24A 337 15.00 c.45.1.4 112968 2fafA 608 15.89 1qd1A 325 19.34 d.58.34.1,d.58.34.1 39493,39494 2f46A 156 19.35 5nulA 138 21.02 c.23.5.1 31191 2hxpA 155 21.27 5nul 138 25.10 2hcrA 326 26.07 1riiA 265 26.43 c.60.1.1 111807 1zzwA 149 29.43 2i6jA 161 33.85 1bx1A 314 36.81 b.43.4.2,c.25.1.1 25629,31519 1wrmA 165 39.03 2c46A 241 39.21 2j16A 182 39.49 1khbA 625 40.06 c.91.1.1,c.109.1.1 68606,68607 1oi7A 288 40.32 c.2.1.8,c.23.4.1 87049,87050 1fpzA 212 43.47 c.45.1.1 59976 2az4A 429 44.03 d.157.1.10 127597 1ui0A 205 44.34 c.18.1.2 99411 2nt2A 145 44.46 1e58A 249 45.35 c.60.1.1 59262 1moqA 368 45.44 c.80.1.1 35302 1h2eA 207 46.42 c.60.1.1 70857 2euiA 153 47.72 d.108.1.1 132387 2hcmA 164 49.50 2p4dA 172 50.71 1zsqA 528 50.79 b.55.1.8,c.45.1.3 125616,125617 2r0bA 154 51.77 1hp1A 516 54.04 d.114.1.1,d.159.1.2 70976,70977 2esbA 188 56.59 3b55A 451 56.98 2gxaA 274 58.31 2v1xA 591 64.69 1r61A 207 64.70 c.8.8.1 97138 2c71A 216 65.67 c.6.2.3 130017 2j5bA 348 65.99 1b63A 333 66.04 d.14.1.3,d.122.1.2 37566,41107 1oheA 348 66.56 c.45.1.1,c.45.1.1 87013,87014 1i9sA 210 66.80 c.45.1.1 62099 1jb9A 316 68.23 b.43.4.2,c.25.1.1 62840,62841 2imgA 151 69.70 2fh7A 595 70.48 1wywA 230 70.56 4ts1A 319 71.13 c.26.1.1 31565 1g2qA 187 71.54 c.61.1.1 65117 2iw0A 254 71.79 c.6.2.3 137737 2yzkA 178 74.47 2qahA 303 74.51 1npyA 271 75.52 c.2.1.7,c.58.1.5 85995,85996 2e0tA 151 75.97 1n7hA 381 76.62 c.2.1.2 80250 1mx0A 472 76.62 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2idaA 102 77.06 2c1iA 431 77.24 c.6.2.3,d.341.1.1 129636,129637 2pbfA 227 78.07 1tvmA 113 78.37 2omkA 231 79.49 2r6hA 290 79.80 1vhwA 253 84.54 c.56.2.1 100706 1u0jA 267 84.55 c.37.1.20 107546 1oywA 523 85.40 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1pa1A 310 85.51 c.45.1.2 94404 1fndA 314 87.84 b.43.4.2,c.25.1.1 25626,31516 1hyhA 309 87.87 c.2.1.5,d.162.1.1 30150,42117 2e7uA 424 89.00