# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	1.54e-15	c.46.1.4	114639
1e0cA	271	4.64e-15	c.46.1.2,c.46.1.2	32717,32718
2hhgA	139	9.44e-15		
1qb0A	211	9.50e-15	c.46.1.1	32699
2oucA	142	1.89e-14		
1t3kA	152	3.81e-14	c.46.1.1	106357
1gmxA	108	4.71e-14	c.46.1.3	65355
1rhs	296	6.27e-14		
2gwfA	157	1.22e-13	c.46.1.4	135802
2j6pA	152	1.30e-13		
2a2kA	175	1.87e-13		
1yt8A	539	2.52e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2fsxA	148	3.45e-13		
1rhsA	296	3.84e-13	c.46.1.2,c.46.1.2	32703,32704
1uarA	285	9.76e-13	c.46.1.2,c.46.1.2	107762,107763
1ymkA	175	1.96e-12	c.46.1.1	123699
1okgA	373	3.71e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	1.38e-10		
1wv9A	94	3.26e-09		
1dkuA	317	5.665	c.61.1.2,c.61.1.2	34118,34119
2b4uA	335	5.673		
1bf6A	291	6.317	c.1.9.3	29065
2f46A	156	10.49		
2fdxA	138	12.63	c.23.5.1	31192
1yz4A	160	12.76		
1qd1A	325	12.84	d.58.34.1,d.58.34.1	39493,39494
2b4pA	334	14.51		
1qhfA	240	14.73	c.60.1.1	33960
2fafA	608	14.86		
2i6jA	161	16.90		
1yn9A	169	19.93		
2hxpA	155	25.63		
1u24A	337	25.96	c.45.1.4	112968
5nulA	138	29.09	c.23.5.1	31191
2hcrA	326	30.32		
1fpzA	212	33.04	c.45.1.1	59976
1tvmA	113	34.47		
1wrmA	165	34.68		
1g2qA	187	36.44	c.61.1.1	65117
1bx1A	314	37.29	b.43.4.2,c.25.1.1	25629,31519
1zzwA	149	37.40		
2j16A	182	38.32		
1riiA	265	40.41	c.60.1.1	111807
1wywA	230	43.01		
1oi7A	288	43.59	c.2.1.8,c.23.4.1	87049,87050
2e0tA	151	45.20		
2gxaA	274	47.64		
1hp1A	516	47.95	d.114.1.1,d.159.1.2	70976,70977
2az4A	429	48.27	d.157.1.10	127597
2c46A	241	48.81		
4ts1A	319	48.87	c.26.1.1	31565
5nul	138	49.21		
1khbA	625	51.03	c.91.1.1,c.109.1.1	68606,68607
1b63A	333	51.76	d.14.1.3,d.122.1.2	37566,41107
2p4dA	172	51.86		
1e58A	249	53.74	c.60.1.1	59262
2esbA	188	54.00		
2nt2A	145	54.14		
2r0bA	154	56.60		
1h2eA	207	57.14	c.60.1.1	70857
2hcmA	164	58.90		
2j5bA	348	61.00		
1r61A	207	61.96	c.8.8.1	97138
2cntA	160	64.19		
1npyA	271	64.75	c.2.1.7,c.58.1.5	85995,85996
2oa8A	233	65.08		
2euiA	153	65.28	d.108.1.1	132387
1jb9A	316	65.85	b.43.4.2,c.25.1.1	62840,62841
2fh7A	595	66.47		
1u0jA	267	67.28	c.37.1.20	107546
1moqA	368	68.22	c.80.1.1	35302
2f4dA	184	68.28		
3b55A	451	68.94		
1y97A	238	69.27	c.55.3.5	122773
1wq3A	322	69.55		
2qahA	303	69.70		
1zsqA	528	71.45	b.55.1.8,c.45.1.3	125616,125617
2yzkA	178	75.30		
1ui0A	205	77.01	c.18.1.2	99411
1oheA	348	77.96	c.45.1.1,c.45.1.1	87013,87014
2p4gA	270	78.41		
1c3pA	375	79.42	c.42.1.2	32606
1i9sA	210	79.44	c.45.1.1	62099
1jaeA	471	79.80	b.71.1.1,c.1.8.1	27773,28760
1hyhA	309	81.64	c.2.1.5,d.162.1.1	30150,42117
2jerA	389	83.59		
2qf2A	624	84.43		
1pa1A	310	85.79	c.45.1.2	94404
2h1rA	299	85.80		
2ganA	190	87.19	d.108.1.1	134889
1r3dA	264	87.65	c.69.1.35	111680
2e7uA	424	88.17