# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1whbA 157 2.08e-14 c.46.1.4 114639 1qb0A 211 8.74e-14 c.46.1.1 32699 1e0cA 271 2.35e-13 c.46.1.2,c.46.1.2 32717,32718 2hhgA 139 2.72e-13 2oucA 142 2.98e-13 2j6pA 152 1.12e-12 2a2kA 175 1.22e-12 2gwfA 157 1.84e-12 c.46.1.4 135802 1t3kA 152 3.27e-12 c.46.1.1 106357 1gmxA 108 3.58e-12 c.46.1.3 65355 2fsxA 148 5.57e-12 1rhs 296 6.09e-12 1rhsA 296 7.95e-12 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 1.38e-11 c.46.1.1 123699 1uarA 285 3.56e-11 c.46.1.2,c.46.1.2 107762,107763 1yt8A 539 3.56e-11 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1okgA 373 4.73e-10 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.73e-08 1wv9A 94 6.04e-07 2hcrA 326 7.655 1yn9A 169 8.857 2f46A 156 10.16 1dkuA 317 19.34 c.61.1.2,c.61.1.2 34118,34119 1u08A 386 23.58 c.67.1.1 107543 2iw0A 254 24.06 c.6.2.3 137737 1w85B 324 24.72 c.36.1.7,c.48.1.2 114336,114337 2czqA 205 25.59 2z6rA 265 28.00 1yz4A 160 28.13 2e0tA 151 29.69 1umdB 324 29.77 c.36.1.7,c.48.1.2 99600,99601 2b4uA 335 30.06 2hxpA 155 31.42 1bf6A 291 31.57 c.1.9.3 29065 2esbA 188 32.55 1wrmA 165 34.16 2r0bA 154 34.49 1vhrA 184 35.99 c.45.1.1 32651 1k0fA 277 39.74 c.92.2.2 71974 1zzwA 149 40.48 2f4dA 184 41.44 2douA 376 41.83 2hcmA 164 44.04 1i9sA 210 44.16 c.45.1.1 62099 1c3pA 375 45.13 c.42.1.2 32606 2nt2A 145 46.36 2i6jA 161 47.50 2az4A 429 47.95 d.157.1.10 127597 2h1vA 310 48.83 1musA 477 49.05 c.55.3.4 79494 1c9kA 180 50.49 c.37.1.11 32363 1rxdA 159 52.03 c.45.1.1 111959 2b4pA 334 55.78 2oa8A 233 56.28 1fpzA 212 56.69 c.45.1.1 59976 2c46A 241 58.32 2ozlB 341 58.48 c.36.1.7,c.48.1.2 139447,139448 1j5xA 342 61.05 c.80.1.1 71591 1oboA 169 62.32 c.23.5.1 86776 1u9yA 284 62.92 c.61.1.2,c.61.1.2 119655,119656 1y97A 238 66.13 c.55.3.5 122773 2imgA 151 67.85 2c1iA 431 68.09 c.6.2.3,d.341.1.1 129636,129637 2dt5A 211 73.03 a.4.5.38,c.2.1.12 131708,131709 2o1eA 312 78.96 1jakA 512 80.93 c.1.8.6,d.92.2.1 66472,66473 2omkA 231 83.69 2hlkA 255 84.54 1vmeA 410 84.97 c.23.5.1,d.157.1.3 108893,108894 1pswA 348 85.85 c.87.1.7 88287 2hm7A 310 86.50 2rcyA 262 87.10 1zsqA 528 88.00 b.55.1.8,c.45.1.3 125616,125617 1ag9A 175 88.32 c.23.5.1 31178 2ahrA 259 89.32 a.100.1.10,c.2.1.6 126775,126776