# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	7.80e-12	c.46.1.4	114639
1qb0A	211	8.58e-12	c.46.1.1	32699
2hhgA	139	2.28e-11		
2oucA	142	2.71e-11		
1e0cA	271	4.41e-11	c.46.1.2,c.46.1.2	32717,32718
2j6pA	152	5.77e-11		
1t3kA	152	1.13e-10	c.46.1.1	106357
2a2kA	175	1.39e-10		
1gmxA	108	1.70e-10	c.46.1.3	65355
1rhs	296	1.84e-10		
2gwfA	157	2.12e-10	c.46.1.4	135802
1rhsA	296	3.37e-10	c.46.1.2,c.46.1.2	32703,32704
1yt8A	539	5.31e-10	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1ymkA	175	8.45e-10	c.46.1.1	123699
2fsxA	148	1.18e-09		
1uarA	285	1.55e-09	c.46.1.2,c.46.1.2	107762,107763
1okgA	373	1.43e-08	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	4.28e-08		
1wv9A	94	7.65e-07		
2b4uA	335	3.343		
2f46A	156	7.580		
1yn9A	169	8.215		
2b4pA	334	15.58		
1rxdA	159	20.03	c.45.1.1	111959
2r0bA	154	22.51		
2hcmA	164	22.88		
2nt2A	145	25.91		
1u24A	337	26.58	c.45.1.4	112968
1oheA	348	26.91	c.45.1.1,c.45.1.1	87013,87014
1yz4A	160	26.94		
1d5rA	324	27.71	b.7.1.1,c.45.1.1	23181,32697
1dkuA	317	27.94	c.61.1.2,c.61.1.2	34118,34119
1musA	477	28.13	c.55.3.4	79494
2czqA	205	31.24		
1wrmA	165	32.17		
2fh7A	595	32.63		
2c46A	241	33.62		
1zzwA	149	35.17		
2p4dA	172	36.54		
2iw0A	254	37.04	c.6.2.3	137737
2esbA	188	39.07		
1i9sA	210	39.20	c.45.1.1	62099
2i6jA	161	39.47		
2hxpA	155	40.06		
1zc0A	309	43.16		
1p15A	253	43.49	c.45.1.2	93894
1c3pA	375	46.80	c.42.1.2	32606
2imgA	151	47.77		
1hp1A	516	48.14	d.114.1.1,d.159.1.2	70976,70977
2hc1A	291	49.47		
1gnlA	544	50.46	e.26.1.1	70287
5nulA	138	51.24	c.23.5.1	31191
1cexA	214	54.09	c.69.1.30	31285
2f4dA	184	58.28		
3b55A	451	58.61		
2hcrA	326	58.88		
1rttA	193	59.66	c.23.5.4	105098
1nnsA	326	62.56	c.88.1.1	85910
1qhfA	240	62.86	c.60.1.1	33960
4pgaA	337	63.39	c.88.1.1	35565
2c71A	216	64.58	c.6.2.3	130017
2p6xA	309	64.68		
1fpzA	212	65.28	c.45.1.1	59976
2pa5A	314	70.04		
2fdxA	138	70.69	c.23.5.1	31192
1xxpA	306	70.95	c.45.1.2	122423
2v5xA	388	71.21		
2e0tA	151	72.08		
1pa1A	310	73.87	c.45.1.2	94404
1zsqA	528	75.79	b.55.1.8,c.45.1.3	125616,125617
1vpvA	300	76.85	c.119.1.1	113975
2yzkA	178	81.49		
2nyvA	222	82.44		
1vhrA	184	83.85	c.45.1.1	32651
1sfsA	240	84.02	c.1.8.8	98846