# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gmxA 108 1.14e-11 c.46.1.3 65355 2hhgA 139 1.15e-11 1whbA 157 5.78e-11 c.46.1.4 114639 1e0cA 271 7.52e-11 c.46.1.2,c.46.1.2 32717,32718 1qb0A 211 1.51e-10 c.46.1.1 32699 2gwfA 157 1.61e-10 c.46.1.4 135802 1rhsA 296 1.80e-10 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 2.19e-10 1uarA 285 4.90e-10 c.46.1.2,c.46.1.2 107762,107763 2a2kA 175 5.11e-10 2oucA 142 2.13e-09 1yt8A 539 2.69e-09 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1ymkA 175 3.38e-09 c.46.1.1 123699 2j6pA 152 5.07e-09 1okgA 373 1.36e-07 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2fsxA 148 1.09e-06 2eg4A 230 1.18e-06 1t3kA 152 1.31e-06 c.46.1.1 106357 1wv9A 94 0.000107 1i9sA 210 3.029 c.45.1.1 62099 1wd5A 208 3.562 c.61.1.1 114524 2c46A 241 3.923 2p5tB 253 5.701 1oheA 348 6.190 c.45.1.1,c.45.1.1 87013,87014 2b82A 211 6.200 c.108.1.12 128057 1o66A 275 7.288 c.1.12.8 92547 2olrA 540 8.034 c.91.1.1,c.109.1.1 139140,139141 1t5oA 351 8.167 c.124.1.5 106459 1u24A 337 10.81 c.45.1.4 112968 2b0cA 206 12.04 c.108.1.2 127633 1rmwA 212 13.07 3boeA 210 13.63 2hcfA 234 13.65 c.108.1.6 136333 1xcbA 211 15.28 a.4.5.38,c.2.1.12 109552,109553 1xbsA 149 15.32 1d5rA 324 15.64 b.7.1.1,c.45.1.1 23181,32697 2b4uA 335 15.69 1edzA 320 15.80 c.2.1.7,c.58.1.2 30287,33935 1v7zA 260 17.06 c.125.1.1 100488 2cukA 311 17.30 3bojA 213 17.46 2dt5A 211 18.46 a.4.5.38,c.2.1.12 131708,131709 1nnsA 326 19.33 c.88.1.1 85910 1fpzA 212 19.57 c.45.1.1 59976 2e55A 208 19.86 2nv2A 294 20.28 3bi1A 709 20.40 1nslA 184 21.42 d.108.1.1 86137 1li4A 432 21.89 c.2.1.4,c.23.12.3 84616,84617 2z1dA 372 22.57 2v6gA 364 22.91 2av4A 162 23.30 1eq2A 310 25.72 c.2.1.2 29814 1zd8A 227 26.61 1yn9A 169 28.47 2bsqA 146 28.75 c.120.1.1 129098 1dpeA 507 28.77 c.94.1.1 35799 2g80A 253 28.81 c.108.1.22 134741 2fi1A 190 29.34 c.108.1.3 133508 1t6cA 315 29.55 c.55.1.8,c.55.1.8 106558,106559 3bhxA 709 30.77 1qgvA 142 30.93 c.47.1.8 33056 1dnpA 471 31.39 a.99.1.1,c.28.1.1 18775,31630 2yvaA 196 31.75 1np7A 489 31.94 a.99.1.1,c.28.1.1 80677,80678 2bl0B 145 33.84 1vpvA 300 34.02 c.119.1.1 113975 2f46A 156 34.95 2c5aA 379 36.49 c.2.1.2 129894 1ii2A 524 37.23 c.91.1.1,c.109.1.1 66146,66147 1r1mA 164 37.60 d.79.7.1 96820 1wdjA 187 37.83 c.52.1.27 114536 2i6jA 161 38.72 2or4A 709 38.91 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2o7iA 592 39.42 1sc6A 404 39.64 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2egxA 269 40.57 1xrsB 262 40.72 c.23.6.1,d.230.4.1 115884,115885 1woqA 267 40.83 c.55.1.10,c.55.1.10 109462,109463 1rxdA 159 41.83 c.45.1.1 111959 1j7jA 178 42.29 c.61.1.1 84131 2z6iA 332 42.67 1zsqA 528 45.62 b.55.1.8,c.45.1.3 125616,125617 2g1uA 155 45.91 2c6cA 707 47.39 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 1xahA 354 48.35 2igbA 179 48.66 4pgaA 337 49.20 c.88.1.1 35565 1tt0A 623 49.45 2dgkA 452 49.94 2d0iA 333 50.72 2cftA 298 50.95 1bf6A 291 51.38 c.1.9.3 29065 2c2xA 281 51.43 2qiwA 255 53.07 1gdhA 320 53.42 c.2.1.4,c.23.12.1 30095,31355 1ituA 369 53.61 c.1.9.7 71423 2gmwA 211 54.39 2ozhA 142 55.12 1v4sA 455 55.40 c.55.1.3,c.55.1.3 100309,100310 1nriA 306 55.84 c.80.1.3 86123 1u3dA 509 56.13 a.99.1.1,c.28.1.1 107638,107639 1ebfA 358 56.32 c.2.1.3,d.81.1.2 30033,39948 1ayl 541 57.33 1wr8A 231 58.19 c.108.1.10 114836 2i2wA 212 58.84 2no4A 240 60.77 1ybdA 239 63.39 c.73.1.3 122884 1rloA 271 63.94 c.108.1.10 111864 1b0aA 288 64.11 c.2.1.7,c.58.1.2 30286,33934 1xr4A 509 65.45 c.124.1.2,c.124.1.2 115860,115861 2bneA 241 66.41 c.73.1.3 128824 2fdrA 229 66.54 c.108.1.6 133319 2dvtA 327 67.08 c.1.9.15 131793 1g94A 448 67.20 b.71.1.1,c.1.8.1 65169,65170 2e1zA 415 69.06 1ygyA 529 69.52 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1d1gA 168 70.23 c.71.1.1 34889 1vhnA 318 70.61 c.1.4.1 100693 2g76A 335 72.52 1r4pA 297 72.75 d.165.1.2 97025 1mw9X 592 72.96 e.10.1.1 91480 1l7mA 211 73.60 c.108.1.4 73664 1m3uA 264 74.02 c.1.12.8 84784 2ootA 709 75.39 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 2cvbA 188 75.48 c.47.1.10 130859 2a5hA 416 75.64 1ltqA 301 76.38 c.108.1.9,c.37.1.1 78208,78209 1us0A 316 76.65 c.1.7.1 99850 2a0uA 383 77.42 1npyA 271 79.49 c.2.1.7,c.58.1.5 85995,85996 1m7gA 211 80.02 c.37.1.4 78724 2gcgA 330 80.29 2ah5A 210 81.06 c.108.1.6 126742 2gxaA 274 81.93 1pswA 348 82.01 c.87.1.7 88287 1tzlA 622 83.67 c.3.1.2,d.16.1.1 112876,112877 2h8lA 252 83.95 1qb7A 236 84.75 c.61.1.1 34087 1lsuA 147 84.76 c.2.1.9 74250 2bz1A 196 85.89 c.144.1.1 129532 1rkqA 282 86.40 c.108.1.10 97621 2j4dA 525 88.02 1tjyA 316 88.06 c.93.1.1 107062 2r1fA 270 88.16 1eokA 290 88.22 c.1.8.5 28991 1z45A 699 89.18 b.30.5.4,c.2.1.2 124427,124428