# List of top-scoring protein chains for T0389.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1urhA 280 3.30e-15 c.46.1.2,c.46.1.2 99829,99830 1uarA 285 1.20e-14 c.46.1.2,c.46.1.2 107762,107763 1rhdA 293 2.58e-12 c.46.1.2,c.46.1.2 32715,32716 1rhsA 296 2.71e-12 c.46.1.2,c.46.1.2 32703,32704 1dp2A 293 2.71e-12 c.46.1.2,c.46.1.2 32705,32706 1e0cA 271 2.75e-12 c.46.1.2,c.46.1.2 32717,32718 2ifdA 175 3.78e-12 1ymkA 175 4.31e-12 c.46.1.1 123699 1cwtA 178 4.33e-12 c.46.1.1 32702 1qb0A 211 4.49e-12 c.46.1.1 32699 2ifvA 175 8.22e-12 1c25A 161 1.31e-11 c.46.1.1 32698 2a2kA 175 2.26e-11 1hzmA 154 9.10e-10 c.46.1.1 65975 2eg4A 230 7.83e-09 2oucA 142 1.57e-08 1okgA 373 6.53e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1tq1A 129 1.07e-07 c.46.1.3 107198 1yt8A 539 2.23e-07 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1gmxA 108 2.29e-07 c.46.1.3 65355 2hhgA 139 4.64e-07 2j6pA 152 7.88e-07 1qxnA 137 1.82e-06 c.46.1.3 96537 2k0zA 110 1.99e-06 1whbA 157 2.37e-06 c.46.1.4 114639 2gwfA 157 3.35e-06 c.46.1.4 135802 1t3kA 152 8.54e-06 c.46.1.1 106357 2fsxA 148 0.001707 1wv9A 94 0.008411 1veeA 134 1.045 2dxnA 274 15.93 1ekjA 221 18.98 c.53.2.1 33364 1mj1A 405 20.49 i.1.1.1 79175 1i2oA 316 35.55 c.1.10.1 61574 1x31B 404 37.33 2yvtA 260 42.67 1v0wA 506 43.22 d.136.1.2,d.136.1.2 108220,108221 2c78A 405 48.72 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1b23P 405 49.54 b.43.3.1,b.44.1.1,c.37.1.8 25689,25729,32124 2e5oA 154 51.97 1eo8H 217 52.35 b.1.1.1,b.1.1.2 20295,21287 1eftA 405 52.94 b.43.3.1,b.44.1.1,c.37.1.8 25688,25728,32123 1exmA 405 53.64 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2c77A 405 54.21 b.43.3.1,b.44.1.1,c.37.1.8 130034,130035,130036 1aipA 405 56.18 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2cyeA 133 59.18 d.38.1.1 131021 2fdrA 229 61.70 c.108.1.6 133319 1wqaA 455 63.85 1f0iA 504 66.83 d.136.1.2,d.136.1.2 59566,59567 1ns5A 155 78.12 c.116.1.3 80705 2qlcA 126 78.85 1rzfH 235 81.21 b.1.1.1,b.1.1.2 98150,98151 2np9A 440 83.54 2e3tA 1331 88.69 1i2pA 316 89.76 c.1.10.1 61576