# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 2.09e-14 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2hhgA 139 6.62e-14 1whbA 157 1.08e-13 c.46.1.4 114639 1rhsA 296 1.60e-13 c.46.1.2,c.46.1.2 32703,32704 2oucA 142 1.69e-13 1qb0A 211 2.22e-13 c.46.1.1 32699 1c25 161 2.37e-13 1gmxA 108 4.23e-13 c.46.1.3 65355 1t3kA 152 5.64e-13 c.46.1.1 106357 2a2kA 175 6.56e-13 1ymkA 175 6.72e-13 c.46.1.1 123699 1e0cA 271 8.09e-13 c.46.1.2,c.46.1.2 32717,32718 1uarA 285 9.04e-13 c.46.1.2,c.46.1.2 107762,107763 2j6pA 152 1.01e-12 2fsxA 148 3.66e-12 1rhs 296 1.03e-11 2gwfA 157 1.06e-11 c.46.1.4 135802 1okgA 373 3.03e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 3.14e-10 1wv9A 94 3.58e-09 2f46A 156 2.884 2b4pA 334 3.405 2c3zA 222 5.036 2b4uA 335 10.82 1zclA 180 11.36 5nulA 138 13.63 c.23.5.1 31191 2c46A 241 13.66 1ywfA 296 13.66 c.45.1.5 124144 1yz4A 160 16.40 1zckA 154 16.45 2oycA 306 16.98 1y0eA 223 18.65 c.1.2.5 116297 2i6jA 161 20.92 1y0bA 197 21.94 c.61.1.1 122476 1rxdA 159 23.21 c.45.1.1 111959 3b2yA 275 24.02 1yn9A 169 24.17 2p1zA 180 24.99 2imgA 151 26.42 1su8A 636 26.88 e.26.1.2 98999 2ggsA 273 28.54 2cybA 323 29.03 1tezA 474 29.24 a.99.1.1,c.28.1.1 112409,112410 2a5lA 200 31.08 c.23.5.8 126176 1x24A 180 31.59 1qgoA 264 33.97 c.92.1.2 35596 1rmwA 212 37.31 1w5fA 353 37.48 c.32.1.1,d.79.2.1 114247,114248 2i8aA 252 38.51 2ps1A 226 38.94 2dm6A 333 40.63 b.35.1.2,c.2.1.1 131567,131568 2omkA 231 41.64 2cftA 298 42.70 1fpzA 212 42.79 c.45.1.1 59976 3brqA 296 43.42 1owlA 484 44.36 a.99.1.1,c.28.1.1 93647,93648 2yv1A 294 45.77 5nul 138 48.03 1yloA 348 49.08 b.49.3.1,c.56.5.4 123659,123660 2b4gA 317 49.71 c.1.4.1 127829 1wrmA 165 51.48 1tzjA 338 53.46 c.79.1.1 112868 2hrdA 253 53.99 1v2dA 381 54.46 c.67.1.1 108281 2dy0A 190 57.26 1d5rA 324 58.07 b.7.1.1,c.45.1.1 23181,32697 1v04A 355 60.50 b.68.6.2 100240 3bfxA 296 62.00 1yfnA 118 63.13 b.136.1.1 123080 1lw3A 657 64.74 b.55.1.8,c.45.1.3 91152,91153 1k32A 1045 65.06 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1npyA 271 68.32 c.2.1.7,c.58.1.5 85995,85996 2hxpA 155 68.72 1zrnA 232 69.71 c.108.1.1 43323 1i9gA 280 72.81 c.66.1.13 62090 1d2eA 397 73.40 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2hcmA 164 77.00 1vddA 228 79.03 e.49.1.1 108519 1zin 217 80.00 1b5pA 385 80.42 c.67.1.1 90403 1xfoA 357 81.10 b.49.3.1,c.56.5.4 115265,115266 1np7A 489 81.67 a.99.1.1,c.28.1.1 80677,80678 1zs9A 261 82.12 c.108.1.22 125600 1o1xA 155 82.51 c.121.1.1 86553 1u3dA 509 83.09 a.99.1.1,c.28.1.1 107638,107639 1ou8A 111 84.58 b.136.1.1 93543 1y0yA 353 84.60 b.49.3.1,c.56.5.4 122514,122515