# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yt8A	539	5.39e-15	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	2.17e-14		
1whbA	157	3.33e-14	c.46.1.4	114639
2oucA	142	3.58e-14		
1qb0A	211	5.64e-14	c.46.1.1	32699
1c25	161	1.08e-13		
1gmxA	108	1.47e-13	c.46.1.3	65355
1rhsA	296	2.01e-13	c.46.1.2,c.46.1.2	32703,32704
2a2kA	175	2.36e-13		
1ymkA	175	2.44e-13	c.46.1.1	123699
2j6pA	152	2.48e-13		
1e0cA	271	3.03e-13	c.46.1.2,c.46.1.2	32717,32718
1t3kA	152	4.32e-13	c.46.1.1	106357
1uarA	285	4.56e-13	c.46.1.2,c.46.1.2	107762,107763
2fsxA	148	1.28e-12		
1rhs	296	2.20e-12		
2gwfA	157	3.55e-12	c.46.1.4	135802
1okgA	373	8.99e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	8.61e-11		
1wv9A	94	2.45e-09		
2b4pA	334	3.119		
2f46A	156	4.991		
2c3zA	222	6.237		
1zclA	180	6.548		
1ywfA	296	8.982	c.45.1.5	124144
2c46A	241	10.91		
2b4uA	335	10.99		
5nulA	138	11.82	c.23.5.1	31191
1zckA	154	16.53		
2oycA	306	17.93		
1yz4A	160	20.31		
1y0eA	223	20.83	c.1.2.5	116297
1rxdA	159	21.56	c.45.1.1	111959
2ggsA	273	21.96		
1y0bA	197	23.69	c.61.1.1	122476
2omkA	231	24.00		
2a5lA	200	25.33	c.23.5.8	126176
2imgA	151	25.92		
2cybA	323	26.67		
2i8aA	252	26.79		
1x24A	180	28.17		
1lw3A	657	31.96	b.55.1.8,c.45.1.3	91152,91153
1yn9A	169	31.96		
2p1zA	180	34.85		
1v04A	355	35.28	b.68.6.2	100240
2ps1A	226	35.58		
1fpzA	212	35.61	c.45.1.1	59976
1d5rA	324	36.79	b.7.1.1,c.45.1.1	23181,32697
5nul	138	38.01		
2i6jA	161	38.30		
1vmkA	277	38.65	c.56.2.1	113680
2hrdA	253	38.68		
1rmwA	212	38.98		
2cftA	298	39.73		
1su8A	636	42.93	e.26.1.2	98999
1wchA	315	43.42	c.45.1.2	114508
1tezA	474	44.74	a.99.1.1,c.28.1.1	112409,112410
2dy0A	190	45.45		
1d2eA	397	51.55	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
3b2yA	275	51.87		
1f60A	458	53.59	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
1v2dA	381	58.90	c.67.1.1	108281
2c2xA	281	62.64		
1u3dA	509	63.47	a.99.1.1,c.28.1.1	107638,107639
1yloA	348	65.87	b.49.3.1,c.56.5.4	123659,123660
2j9iA	421	67.02		
1b5pA	385	67.12	c.67.1.1	90403
1o1xA	155	67.16	c.121.1.1	86553
1je0A	236	67.24	c.56.2.1	66581
1w5fA	353	68.80	c.32.1.1,d.79.2.1	114247,114248
2yv1A	294	68.83		
1wtaA	275	73.74		
2c78A	405	74.15	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
1qgoA	264	75.95	c.92.1.2	35596
1npyA	271	79.03	c.2.1.7,c.58.1.5	85995,85996
1vrvA	101	79.93		
2dm6A	333	80.94	b.35.1.2,c.2.1.1	131567,131568
1xxpA	306	82.28	c.45.1.2	122423
1wrmA	165	82.49		
1owlA	484	83.09	a.99.1.1,c.28.1.1	93647,93648
1bif	469	84.07		
1h4pA	408	86.10	c.1.8.3	90617
2a67A	167	87.32		
2eo5A	419	88.53