# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 1.51e-17 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 8.29e-17 c.46.1.2,c.46.1.2 32703,32704 2hhgA 139 1.59e-16 1e0cA 271 3.06e-16 c.46.1.2,c.46.1.2 32717,32718 2oucA 142 3.20e-16 1gmxA 108 9.17e-16 c.46.1.3 65355 1qb0A 211 1.01e-15 c.46.1.1 32699 1uarA 285 1.49e-15 c.46.1.2,c.46.1.2 107762,107763 1whbA 157 1.97e-15 c.46.1.4 114639 1c25 161 2.19e-15 2j6pA 152 2.56e-15 1rhs 296 3.02e-15 1t3kA 152 5.14e-15 c.46.1.1 106357 2a2kA 175 8.39e-15 1ymkA 175 1.06e-14 c.46.1.1 123699 2fsxA 148 3.10e-14 1okgA 373 4.36e-14 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2gwfA 157 3.51e-13 c.46.1.4 135802 2eg4A 230 2.16e-12 1wv9A 94 7.97e-11 2c3zA 222 1.796 2b4uA 335 3.188 2f46A 156 4.800 1yn9A 169 5.543 2ps1A 226 6.130 1y0bA 197 6.957 c.61.1.1 122476 2b4pA 334 7.589 1zclA 180 7.878 2dy0A 190 8.078 2imgA 151 9.269 2cftA 298 10.64 1npyA 271 10.87 c.2.1.7,c.58.1.5 85995,85996 5nulA 138 11.91 c.23.5.1 31191 2oycA 306 12.76 1tf5A 844 13.03 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2c46A 241 14.68 1rxdA 159 14.88 c.45.1.1 111959 3b5vA 248 15.68 1ywfA 296 16.01 c.45.1.5 124144 1x24A 180 17.00 1y0eA 223 17.49 c.1.2.5 116297 1zckA 154 17.89 2cybA 323 18.13 1d2eA 397 18.15 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1a53 247 21.29 1m3uA 264 23.75 c.1.12.8 84784 1je0A 236 24.75 c.56.2.1 66581 1oheA 348 26.02 c.45.1.1,c.45.1.1 87013,87014 2i8aA 252 26.09 1igs 248 26.29 1yz4A 160 27.67 2hlkA 255 28.57 2eo5A 419 30.11 2p1zA 180 30.78 2go7A 207 30.88 c.108.1.6 135434 2yzkA 178 31.79 2hrdA 253 31.88 1i9gA 280 32.28 c.66.1.13 62090 2c2xA 281 32.34 1v7zA 260 32.40 c.125.1.1 100488 2d2jA 329 33.03 c.1.9.3 131175 2c5sA 413 34.54 c.26.2.6,d.308.1.1 129950,129951 1vmkA 277 34.96 c.56.2.1 113680 2etxA 209 35.74 1oywA 523 35.91 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1qb7A 236 38.44 c.61.1.1 34087 1o6dA 163 39.03 c.116.1.3 92567 2j9iA 421 39.92 1owlA 484 40.78 a.99.1.1,c.28.1.1 93647,93648 2pibA 216 41.11 1r61A 207 41.34 c.8.8.1 97138 1qgoA 264 41.62 c.92.1.2 35596 1u3dA 509 41.87 a.99.1.1,c.28.1.1 107638,107639 2adoA 196 42.40 5nul 138 44.85 1v04A 355 46.00 b.68.6.2 100240 1zrnA 232 46.43 c.108.1.1 43323 1tezA 474 46.65 a.99.1.1,c.28.1.1 112409,112410 1fpzA 212 46.75 c.45.1.1 59976 2dm6A 333 47.56 b.35.1.2,c.2.1.1 131567,131568 2omkA 231 47.70 1vhrA 184 48.09 c.45.1.1 32651 2hi0A 240 48.40 1rmwA 212 48.99 2fe7A 166 49.26 d.108.1.1 133325 2c78A 405 53.03 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2ia4A 287 55.84 1zd3A 555 56.05 c.108.1.2,c.69.1.11 124930,124931 2hdoA 209 57.02 c.108.1.6 136345 1a53A 247 58.23 c.1.2.4 28564 1i2cA 404 58.81 c.2.1.2 83666 2yv1A 294 60.10 2ah5A 210 60.57 c.108.1.6 126742 2nygA 273 61.46 1jztA 246 61.66 c.104.1.1 63319 2c4nA 250 61.92 c.108.1.14 129837 1byrA 155 61.94 d.136.1.1 41450 1yfnA 118 62.37 b.136.1.1 123080 1su8A 636 63.02 e.26.1.2 98999 1exmA 405 63.79 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2om6A 235 63.83 1t5iA 172 64.22 c.37.1.19 106450 1te2A 226 65.16 c.108.1.6 106792 1f60A 458 65.23 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1pjqA 457 65.30 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2jfgA 445 65.46 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1d5rA 324 65.76 b.7.1.1,c.45.1.1 23181,32697 1zs9A 261 65.98 c.108.1.22 125600 1o66A 275 67.45 c.1.12.8 92547 1ou8A 111 69.47 b.136.1.1 93543 2hoqA 241 70.89 2aeeA 211 71.26 c.61.1.1 126620 1cliA 345 71.28 d.79.4.1,d.139.1.1 39816,41459 1qq5A 253 71.35 c.108.1.1 43327 2no4A 240 72.66 1x42A 232 72.66 c.108.1.1 121677 1l1qA 186 72.80 c.61.1.1 77653 2i6jA 161 73.78 2ho4A 259 74.30 2vlbA 251 74.88 1l1eA 287 75.19 c.66.1.18 73454 1iatA 557 75.19 c.80.1.2 62123 1zzwA 149 75.78 1zylA 328 76.71 2b4gA 317 77.62 c.1.4.1 127829 2e0tA 151 77.70 2f4dA 184 78.87 2esbA 188 79.63 1o08A 221 80.51 c.108.1.6 86525 1fc6A 388 80.71 b.36.1.3,c.14.1.2 64738,64739 2a5lA 200 83.54 c.23.5.8 126176 2ggsA 273 84.57 1nrvA 105 85.45 d.93.1.1 86126 2gupA 292 86.18 c.55.1.10,c.55.1.10 135744,135745 2hcmA 164 86.33 2yxeA 215 86.37 1ny1A 240 87.01 c.6.2.3 86395 1wchA 315 87.26 c.45.1.2 114508 1u24A 337 88.43 c.45.1.4 112968 1bf6A 291 89.95 c.1.9.3 29065