# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 4.99e-16 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2hhgA 139 1.29e-15 1qb0A 211 4.18e-15 c.46.1.1 32699 1whbA 157 6.03e-15 c.46.1.4 114639 2oucA 142 7.05e-15 1c25 161 7.85e-15 1e0cA 271 1.21e-14 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.43e-14 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.57e-14 c.46.1.3 65355 2a2kA 175 2.66e-14 1ymkA 175 3.28e-14 c.46.1.1 123699 1uarA 285 4.24e-14 c.46.1.2,c.46.1.2 107762,107763 1t3kA 152 4.89e-14 c.46.1.1 106357 2j6pA 152 6.23e-14 1rhs 296 9.78e-14 2fsxA 148 9.87e-14 2gwfA 157 1.46e-12 c.46.1.4 135802 1okgA 373 5.32e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 4.58e-11 1wv9A 94 1.05e-09 2b4uA 335 4.299 2b4pA 334 6.516 2c3zA 222 9.024 2f46A 156 10.55 2cftA 298 11.11 5nulA 138 14.30 c.23.5.1 31191 2c46A 241 15.91 1yn9A 169 16.16 1zclA 180 16.40 2oycA 306 23.17 1rxdA 159 24.97 c.45.1.1 111959 2hkeA 380 28.15 1y0bA 197 28.98 c.61.1.1 122476 1ywfA 296 30.10 c.45.1.5 124144 1x24A 180 30.37 2b4gA 317 31.55 c.1.4.1 127829 2yv1A 294 32.38 1yz4A 160 33.29 2c78A 405 33.46 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1d2eA 397 34.37 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2ggsA 273 36.54 2cybA 323 38.21 2eo5A 419 38.26 1qgoA 264 40.04 c.92.1.2 35596 1zckA 154 40.25 1tezA 474 41.19 a.99.1.1,c.28.1.1 112409,112410 3cssA 267 41.65 1zin 217 42.76 1y0eA 223 44.02 c.1.2.5 116297 2dy0A 190 44.33 1oywA 523 44.75 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1zavA 180 45.05 2p1zA 180 45.10 3b2yA 275 47.51 1fpzA 212 48.70 c.45.1.1 59976 1bif 469 49.02 2i6jA 161 49.85 1d5rA 324 50.55 b.7.1.1,c.45.1.1 23181,32697 2dm6A 333 51.74 b.35.1.2,c.2.1.1 131567,131568 1tf5A 844 52.02 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1i9sA 210 55.53 c.45.1.1 62099 2omkA 231 57.58 2i8aA 252 58.07 2h1rA 299 58.97 2hi0A 240 59.17 5nul 138 60.32 2oqxA 467 61.65 3bfxA 296 62.26 1wchA 315 63.94 c.45.1.2 114508 1l1eA 287 64.08 c.66.1.18 73454 1yloA 348 71.09 b.49.3.1,c.56.5.4 123659,123660 1je0A 236 71.13 c.56.2.1 66581 1oheA 348 71.79 c.45.1.1,c.45.1.1 87013,87014 1vhrA 184 72.20 c.45.1.1 32651 1byrA 155 72.56 d.136.1.1 41450 2hrdA 253 74.59 1e5xA 486 77.14 c.79.1.1 59283 2a5lA 200 78.79 c.23.5.8 126176 1fc6A 388 83.07 b.36.1.3,c.14.1.2 64738,64739 2im5A 394 83.93 1xxpA 306 84.01 c.45.1.2 122423 1u24A 337 85.47 c.45.1.4 112968 2pibA 216 86.15 1ytw 306 86.76 2bm8A 236 89.21 c.66.1.50 128771 2d2jA 329 89.32 c.1.9.3 131175