# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 2.47e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2hhgA 139 6.23e-15 1qb0A 211 2.18e-14 c.46.1.1 32699 1whbA 157 2.98e-14 c.46.1.4 114639 1e0cA 271 3.32e-14 c.46.1.2,c.46.1.2 32717,32718 2oucA 142 3.56e-14 1c25 161 3.68e-14 1rhsA 296 5.58e-14 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 7.67e-14 c.46.1.3 65355 2a2kA 175 1.29e-13 1uarA 285 1.33e-13 c.46.1.2,c.46.1.2 107762,107763 1ymkA 175 1.34e-13 c.46.1.1 123699 2j6pA 152 2.30e-13 1t3kA 152 2.32e-13 c.46.1.1 106357 2fsxA 148 5.13e-13 1rhs 296 6.55e-13 2gwfA 157 5.59e-12 c.46.1.4 135802 1okgA 373 2.23e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.47e-10 1wv9A 94 2.82e-09 2b4uA 335 4.957 2b4pA 334 5.708 2f46A 156 8.156 2cftA 298 10.30 5nulA 138 11.92 c.23.5.1 31191 2c3zA 222 13.35 2c46A 241 15.41 1yn9A 169 15.92 1zclA 180 16.55 1y0bA 197 19.91 c.61.1.1 122476 2oycA 306 20.96 1ywfA 296 22.92 c.45.1.5 124144 1rxdA 159 23.94 c.45.1.1 111959 2cybA 323 25.01 2yv1A 294 25.85 2hkeA 380 27.42 2ggsA 273 28.63 1x24A 180 30.66 1yz4A 160 32.93 1qgoA 264 33.28 c.92.1.2 35596 1tezA 474 34.90 a.99.1.1,c.28.1.1 112409,112410 2p1zA 180 36.92 1zin 217 38.23 1d2eA 397 38.60 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2b4gA 317 38.85 c.1.4.1 127829 2i6jA 161 39.28 1zckA 154 40.63 1bif 469 41.22 2eo5A 419 42.87 2dy0A 190 43.18 1oheA 348 44.68 c.45.1.1,c.45.1.1 87013,87014 1i9sA 210 45.37 c.45.1.1 62099 1fpzA 212 46.71 c.45.1.1 59976 5nul 138 47.82 3b2yA 275 49.56 1d5rA 324 51.87 b.7.1.1,c.45.1.1 23181,32697 2c78A 405 53.28 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2pibA 216 54.06 2dm6A 333 54.53 b.35.1.2,c.2.1.1 131567,131568 1y0eA 223 56.86 c.1.2.5 116297 1wchA 315 58.06 c.45.1.2 114508 3bfxA 296 58.23 1tf5A 844 58.85 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2hi0A 240 60.01 2oqxA 467 60.97 1v2dA 381 60.99 c.67.1.1 108281 1fc6A 388 62.44 b.36.1.3,c.14.1.2 64738,64739 2omkA 231 65.60 2h1rA 299 65.80 3cssA 267 67.52 3c3kA 285 67.52 1vhrA 184 73.23 c.45.1.1 32651 1e5xA 486 74.42 c.79.1.1 59283 1je0A 236 74.53 c.56.2.1 66581 1tzjA 338 74.72 c.79.1.1 112868 1oywA 523 75.20 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1l1eA 287 75.98 c.66.1.18 73454 1u24A 337 78.38 c.45.1.4 112968 1yloA 348 79.00 b.49.3.1,c.56.5.4 123659,123660 1db3A 372 80.86 c.2.1.2 29813 2i8aA 252 82.08 2a5lA 200 82.13 c.23.5.8 126176 1byrA 155 83.89 d.136.1.1 41450 1bf6A 291 85.05 c.1.9.3 29065 2c5sA 413 85.45 c.26.2.6,d.308.1.1 129950,129951 1ytw 306 86.49 1lw3A 657 87.36 b.55.1.8,c.45.1.3 91152,91153 1oi7A 288 87.61 c.2.1.8,c.23.4.1 87049,87050 2ah5A 210 89.38 c.108.1.6 126742