# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 6.93e-15 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2hhgA 139 1.49e-14 1qb0A 211 5.18e-14 c.46.1.1 32699 1whbA 157 5.36e-14 c.46.1.4 114639 2oucA 142 6.73e-14 1c25 161 8.98e-14 1e0cA 271 1.09e-13 c.46.1.2,c.46.1.2 32717,32718 1rhsA 296 1.20e-13 c.46.1.2,c.46.1.2 32703,32704 1gmxA 108 1.94e-13 c.46.1.3 65355 1uarA 285 2.58e-13 c.46.1.2,c.46.1.2 107762,107763 1ymkA 175 2.81e-13 c.46.1.1 123699 2a2kA 175 2.84e-13 2j6pA 152 3.13e-13 1t3kA 152 4.42e-13 c.46.1.1 106357 1rhs 296 9.51e-13 2fsxA 148 9.82e-13 2gwfA 157 8.68e-12 c.46.1.4 135802 1okgA 373 3.15e-11 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 2.71e-10 1wv9A 94 4.32e-09 2b4uA 335 4.097 2b4pA 334 4.537 2f46A 156 8.360 5nulA 138 9.662 c.23.5.1 31191 2cftA 298 10.70 2c3zA 222 11.13 1zclA 180 12.65 2c46A 241 15.52 1yn9A 169 16.12 2oycA 306 19.24 1y0bA 197 23.48 c.61.1.1 122476 2b4gA 317 23.58 c.1.4.1 127829 2yv1A 294 26.14 1ywfA 296 26.22 c.45.1.5 124144 1rxdA 159 26.26 c.45.1.1 111959 2hkeA 380 26.28 2cybA 323 26.59 1yz4A 160 28.32 1zin 217 29.20 1x24A 180 33.80 2ggsA 273 34.12 1qgoA 264 35.90 c.92.1.2 35596 1d5rA 324 36.28 b.7.1.1,c.45.1.1 23181,32697 2i6jA 161 36.67 2p1zA 180 38.47 3bfxA 296 39.07 5nul 138 41.24 1zckA 154 42.72 1fpzA 212 43.52 c.45.1.1 59976 1y0eA 223 44.16 c.1.2.5 116297 1tezA 474 44.23 a.99.1.1,c.28.1.1 112409,112410 2dy0A 190 44.48 1wchA 315 44.57 c.45.1.2 114508 1i9sA 210 44.97 c.45.1.1 62099 2eo5A 419 45.99 2omkA 231 46.36 2hi0A 240 47.19 1fc6A 388 50.85 b.36.1.3,c.14.1.2 64738,64739 3b2yA 275 52.80 1tf5A 844 53.02 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2oqxA 467 54.55 2pibA 216 56.13 1oheA 348 56.74 c.45.1.1,c.45.1.1 87013,87014 3c3kA 285 57.00 1v2dA 381 57.33 c.67.1.1 108281 1bif 469 60.18 1d2eA 397 60.21 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1vhrA 184 61.38 c.45.1.1 32651 1yloA 348 62.66 b.49.3.1,c.56.5.4 123659,123660 1je0A 236 62.78 c.56.2.1 66581 1oywA 523 64.99 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2imgA 151 66.07 2aa4A 289 67.69 c.55.1.10,c.55.1.10 126465,126466 3cssA 267 69.20 1bf6A 291 74.20 c.1.9.3 29065 1ytw 306 75.55 1u24A 337 76.70 c.45.1.4 112968 1xxpA 306 76.92 c.45.1.2 122423 1byrA 155 77.40 d.136.1.1 41450 1e5xA 486 77.82 c.79.1.1 59283 2dm6A 333 79.13 b.35.1.2,c.2.1.1 131567,131568 1vk2A 204 79.13 c.18.1.2 100845 2fh7A 595 79.15 2c5sA 413 79.71 c.26.2.6,d.308.1.1 129950,129951 3brqA 296 79.80 1y0yA 353 79.90 b.49.3.1,c.56.5.4 122514,122515 1v7zA 260 80.09 c.125.1.1 100488 2go7A 207 80.73 c.108.1.6 135434 1oi7A 288 84.52 c.2.1.8,c.23.4.1 87049,87050 2i8aA 252 88.79 1u0jA 267 89.94 c.37.1.20 107546