# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hhgA	139	3.99e-16		
1yt8A	539	6.00e-16	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2oucA	142	1.25e-15		
1rhsA	296	1.67e-15	c.46.1.2,c.46.1.2	32703,32704
1whbA	157	1.83e-15	c.46.1.4	114639
2j6pA	152	2.25e-15		
1qb0A	211	2.86e-15	c.46.1.1	32699
1e0cA	271	7.93e-15	c.46.1.2,c.46.1.2	32717,32718
1gmxA	108	9.76e-15	c.46.1.3	65355
1c25	161	9.97e-15		
1t3kA	152	3.16e-14	c.46.1.1	106357
1ymkA	175	3.84e-14	c.46.1.1	123699
2a2kA	175	4.27e-14		
1uarA	285	6.32e-14	c.46.1.2,c.46.1.2	107762,107763
2fsxA	148	1.17e-13		
1rhs	296	1.39e-13		
2gwfA	157	3.09e-13	c.46.1.4	135802
1okgA	373	2.19e-12	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	8.70e-12		
1wv9A	94	7.12e-10		
2c3zA	222	1.756		
1yn9A	169	3.350		
1zclA	180	5.073		
2b4uA	335	7.072		
2f46A	156	8.252		
1rxdA	159	10.51	c.45.1.1	111959
2b4pA	334	10.85		
2oycA	306	11.10		
1x24A	180	12.64		
1oheA	348	13.53	c.45.1.1,c.45.1.1	87013,87014
2cftA	298	14.16		
5nulA	138	14.92	c.23.5.1	31191
1zckA	154	15.38		
2imgA	151	18.83		
1npyA	271	20.74	c.2.1.7,c.58.1.5	85995,85996
2hlkA	255	21.80		
2b4gA	317	22.66	c.1.4.1	127829
2c46A	241	23.63		
1y0bA	197	30.38	c.61.1.1	122476
1i9gA	280	31.57	c.66.1.13	62090
1qb7A	236	32.31	c.61.1.1	34087
2d2jA	329	32.98	c.1.9.3	131175
1yz4A	160	39.09		
2i6jA	161	41.91		
2yv1A	294	42.18		
1d5rA	324	43.98	b.7.1.1,c.45.1.1	23181,32697
1vhrA	184	45.03	c.45.1.1	32651
1sqgA	429	45.29	a.79.1.3,c.66.1.38	105912,105913
2ggsA	273	45.57		
2c1iA	431	46.75	c.6.2.3,d.341.1.1	129636,129637
2r0bA	154	48.24		
1oywA	523	51.66	a.4.5.43,c.37.1.19,c.37.1.19	93760,93761,93762
1zzwA	149	51.82		
2nt2A	145	52.22		
1fpzA	212	53.25	c.45.1.1	59976
2hi0A	240	53.34		
2f4dA	184	55.38		
1i9sA	210	56.05	c.45.1.1	62099
2cybA	323	57.02		
1jztA	246	58.05	c.104.1.1	63319
2c5sA	413	58.11	c.26.2.6,d.308.1.1	129950,129951
2hxpA	155	58.55		
1o6dA	163	59.39	c.116.1.3	92567
2fh7A	595	59.97		
1bf6A	291	60.88	c.1.9.3	29065
5nul	138	61.91		
1jlnA	297	66.09	c.45.1.2	63172
2hkeA	380	66.78		
2e0tA	151	68.52		
1i0dA	332	69.97	c.1.9.3	61487
1w1iE	357	72.13	c.1.9.1	109051
2p4dA	172	73.35		
3brqA	296	74.11		
1l1eA	287	75.66	c.66.1.18	73454
1vjrA	271	75.70	c.108.1.14	100832
2df8A	325	76.61		
1o1xA	155	76.62	c.121.1.1	86553
1qd1A	325	82.33	d.58.34.1,d.58.34.1	39493,39494
2dy0A	190	82.85		
1tzjA	338	84.17	c.79.1.1	112868
2j9iA	421	84.88		
1ny1A	240	85.23	c.6.2.3	86395
1r61A	207	85.69	c.8.8.1	97138
2ht9A	146	89.34