# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 7.57e-17 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1rhsA 296 9.58e-16 c.46.1.2,c.46.1.2 32703,32704 2oucA 142 1.15e-15 2hhgA 139 1.37e-15 1whbA 157 2.25e-15 c.46.1.4 114639 1e0cA 271 3.90e-15 c.46.1.2,c.46.1.2 32717,32718 2j6pA 152 4.76e-15 1qb0A 211 4.81e-15 c.46.1.1 32699 1c25 161 4.83e-15 1gmxA 108 6.01e-15 c.46.1.3 65355 1t3kA 152 1.49e-14 c.46.1.1 106357 2a2kA 175 1.76e-14 1ymkA 175 2.24e-14 c.46.1.1 123699 1rhs 296 2.74e-14 1uarA 285 3.81e-14 c.46.1.2,c.46.1.2 107762,107763 2fsxA 148 6.16e-14 2gwfA 157 2.63e-13 c.46.1.4 135802 1okgA 373 2.64e-13 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.23e-11 1wv9A 94 6.12e-10 2b4pA 334 3.969 2c3zA 222 4.171 1yn9A 169 5.476 2f46A 156 9.098 2b4uA 335 9.588 5nulA 138 9.736 c.23.5.1 31191 2cftA 298 10.99 2oycA 306 11.32 1zclA 180 12.20 1rxdA 159 13.17 c.45.1.1 111959 1x24A 180 13.24 2i8aA 252 17.60 2imgA 151 18.87 2c46A 241 18.91 1ywfA 296 19.53 c.45.1.5 124144 1yz4A 160 20.07 1npyA 271 20.35 c.2.1.7,c.58.1.5 85995,85996 1y0bA 197 21.40 c.61.1.1 122476 2cybA 323 23.16 1zckA 154 24.40 2hlkA 255 25.66 2c78A 405 26.25 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1o6dA 163 26.71 c.116.1.3 92567 1d2eA 397 27.45 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1y0eA 223 27.59 c.1.2.5 116297 2p1zA 180 28.11 5nul 138 28.70 1su8A 636 29.34 e.26.1.2 98999 1d5rA 324 32.18 b.7.1.1,c.45.1.1 23181,32697 1f60A 458 32.80 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1vhrA 184 33.05 c.45.1.1 32651 2hrdA 253 33.50 1yfnA 118 35.82 b.136.1.1 123080 1fpzA 212 37.96 c.45.1.1 59976 1l1eA 287 37.96 c.66.1.18 73454 2ps1A 226 38.67 2omkA 231 39.02 1wchA 315 39.44 c.45.1.2 114508 1v04A 355 40.82 b.68.6.2 100240 2hxpA 155 41.79 1n2zA 245 41.95 c.92.2.2 79865 2hi0A 240 42.33 1oheA 348 43.22 c.45.1.1,c.45.1.1 87013,87014 1je0A 236 43.45 c.56.2.1 66581 1qgoA 264 46.74 c.92.1.2 35596 2i6jA 161 46.81 2citA 282 47.40 c.1.8.3 130499 2b4gA 317 48.49 c.1.4.1 127829 2j16A 182 49.28 2r0bA 154 50.13 1vmkA 277 51.66 c.56.2.1 113680 3bfxA 296 52.04 2go7A 207 52.65 c.108.1.6 135434 2e0tA 151 56.04 2pibA 216 59.45 2dy0A 190 62.13 3b2yA 275 62.48 2dm6A 333 63.89 b.35.1.2,c.2.1.1 131567,131568 1oywA 523 66.23 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1wtaA 275 67.13 2c2xA 281 67.26 1cexA 214 69.28 c.69.1.30 31285 2oqxA 467 70.92 2f4dA 184 71.23 2c5sA 413 71.42 c.26.2.6,d.308.1.1 129950,129951 1u24A 337 72.52 c.45.1.4 112968 1aipA 405 73.18 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1y0yA 353 75.30 b.49.3.1,c.56.5.4 122514,122515 1rxyA 253 76.06 c.56.2.1 98065 2ggsA 273 76.74 1ny1A 240 76.83 c.6.2.3 86395 1rmwA 212 76.93 1dxy 333 77.74 2d2jA 329 78.03 c.1.9.3 131175 2a67A 167 78.26 1jubA 311 79.08 c.1.4.1 90908 1ou8A 111 80.13 b.136.1.1 93543 1zavA 180 82.30 2yzkA 178 82.41 2dekA 265 83.16 c.90.1.1 131430 2a5lA 200 83.21 c.23.5.8 126176 2yv1A 294 84.25 1fc6A 388 84.96 b.36.1.3,c.14.1.2 64738,64739 1kpgA 287 85.80 c.66.1.18 68735 2gf3A 389 86.22 c.3.1.2,d.16.1.3 135070,135071 2d51A 406 86.34 2fe7A 166 86.46 d.108.1.1 133325 1zin 217 87.04 2b82A 211 87.72 c.108.1.12 128057 1r61A 207 88.28 c.8.8.1 97138 1zrnA 232 88.31 c.108.1.1 43323 1rcf 169 88.60 1or8A 340 88.94 c.66.1.6 93451