# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 3.74e-18 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2oucA 142 1.92e-17 2hhgA 139 6.31e-17 1whbA 157 8.66e-17 c.46.1.4 114639 1uarA 285 1.54e-16 c.46.1.2,c.46.1.2 107762,107763 1qb0A 211 2.28e-16 c.46.1.1 32699 1gmxA 108 2.38e-16 c.46.1.3 65355 1c25 161 2.45e-16 2j6pA 152 3.43e-16 1rhsA 296 5.14e-16 c.46.1.2,c.46.1.2 32703,32704 1ymkA 175 1.11e-15 c.46.1.1 123699 1t3kA 152 1.55e-15 c.46.1.1 106357 1e0cA 271 2.12e-15 c.46.1.2,c.46.1.2 32717,32718 2a2kA 175 7.10e-15 2fsxA 148 1.96e-14 2gwfA 157 2.09e-14 c.46.1.4 135802 1rhs 296 4.05e-14 1okgA 373 5.13e-14 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 1.31e-12 1wv9A 94 1.49e-10 1tf5A 844 0.8727 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2c3zA 222 1.356 2bcgG 453 1.940 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 1lurA 339 4.112 b.30.5.4 84717 1yn9A 169 5.345 1lw3A 657 6.129 b.55.1.8,c.45.1.3 91152,91153 2eo5A 419 6.363 5nulA 138 6.778 c.23.5.1 31191 2f48A 555 7.005 c.89.1.1 132915 2f46A 156 7.099 2cftA 298 12.84 2imgA 151 12.89 1rxdA 159 13.60 c.45.1.1 111959 1e5xA 486 13.65 c.79.1.1 59283 1x24A 180 13.68 1idkA 359 13.78 b.80.1.2 28025 1o6dA 163 13.95 c.116.1.3 92567 1jnyA 435 13.97 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2dy0A 190 14.99 2b5eA 504 15.71 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1x1tA 260 16.65 c.2.1.2 121597 1zclA 180 16.70 5nul 138 16.75 2b4pA 334 16.76 1yz4A 160 17.74 1y0bA 197 17.94 c.61.1.1 122476 2c2xA 281 18.55 2oycA 306 18.72 1uteA 313 19.74 d.159.1.1 42078 2p1zA 180 20.69 2gl5A 410 21.19 c.1.11.2,d.54.1.1 135336,135337 2b4uA 335 21.88 1n2zA 245 22.24 c.92.2.2 79865 2ps1A 226 22.38 3b5vA 248 23.06 1vhrA 184 24.34 c.45.1.1 32651 1v2dA 381 25.32 c.67.1.1 108281 2ggsA 273 25.71 2i6jA 161 26.31 1y0yA 353 26.40 b.49.3.1,c.56.5.4 122514,122515 2hpvA 208 28.35 2d2jA 329 28.80 c.1.9.3 131175 1cznA 169 28.91 c.23.5.1 31181 1yfnA 118 29.05 b.136.1.1 123080 1zckA 154 29.13 2go7A 207 29.14 c.108.1.6 135434 2a5lA 200 30.46 c.23.5.8 126176 1vr0A 247 33.72 c.148.1.1 120428 2hbtA 247 33.77 1fs5A 266 33.90 c.124.1.1 65044 3bfxA 296 33.98 1t0bA 252 34.04 c.23.16.6 106199 2yv1A 294 34.55 1zin 217 34.85 2hlkA 255 35.00 1qusA 322 35.51 d.2.1.6 36991 1d2eA 397 35.77 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1qf9A 194 36.00 c.37.1.1 31848 1e4yA 214 36.19 c.37.1.1,g.41.2.1 31901,45181 2hxpA 155 36.54 1a53 247 36.80 2af4C 333 39.96 c.77.1.5 126656 2cxaA 256 41.02 d.108.1.6 130993 1mxgA 435 41.15 b.71.1.1,c.1.8.1 85193,85194 3b2yA 275 41.96 2v0hA 456 42.52 2j16A 182 42.86 2pibA 216 43.06 2c5sA 413 43.64 c.26.2.6,d.308.1.1 129950,129951 1tyfA 193 44.86 c.14.1.1 30885 1u24A 337 45.06 c.45.1.4 112968 1psdA 409 46.09 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2c4nA 250 46.99 c.108.1.14 129837 1vk2A 204 47.92 c.18.1.2 100845 2e0tA 151 49.94 1n4aA 252 50.94 c.92.2.2 85317 1pzxA 289 50.96 c.119.1.1 95484 2c78A 405 51.03 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1tg6A 277 51.85 c.14.1.1 119236 2b0mA 393 52.09 c.1.4.1 127644 1d5rA 324 53.20 b.7.1.1,c.45.1.1 23181,32697 1ywfA 296 54.04 c.45.1.5 124144 1oywA 523 54.68 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x42A 232 55.54 c.108.1.1 121677 1oboA 169 55.79 c.23.5.1 86776 2yvtA 260 57.05 1v93A 296 57.71 c.1.23.1 100532 1byrA 155 57.77 d.136.1.1 41450 2fh7A 595 57.83 2hhjA 267 59.19 c.60.1.1 136497 1zsqA 528 60.06 b.55.1.8,c.45.1.3 125616,125617 1vmkA 277 60.20 c.56.2.1 113680 2yzkA 178 60.54 1wrmA 165 61.41 2i8aA 252 63.37 1rcf 169 63.85 1rmwA 212 65.10 2c46A 241 65.56 1u3dA 509 66.10 a.99.1.1,c.28.1.1 107638,107639 1vjrA 271 66.27 c.108.1.14 100832 1idk 359 72.85 2f2sA 406 73.57 2gv8A 447 74.02 c.3.1.5,c.3.1.5 135759,135760 2omkA 231 74.09 1q7bA 244 75.60 c.2.1.2 96026 2oqxA 467 76.35 2r79A 283 76.86 1ga6A 372 77.86 c.41.1.2 32556 1ny1A 240 78.38 c.6.2.3 86395 1rvgA 305 79.78 c.1.10.2 97920 1zzwA 149 80.03 2hkeA 380 80.17 1gof 639 82.52 1wtaA 275 84.09 1su8A 636 84.94 e.26.1.2 98999 1j3lA 164 84.95 c.8.7.1 90813 2hcmA 164 84.97 1exmA 405 85.17 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2citA 282 85.78 c.1.8.3 130499 1v7zA 260 85.95 c.125.1.1 100488 2b82A 211 87.40 c.108.1.12 128057 1fpzA 212 87.94 c.45.1.1 59976 1i9gA 280 88.50 c.66.1.13 62090 1k4iA 233 88.92 d.115.1.2 72056 1cexA 214 88.97 c.69.1.30 31285 2r0bA 154 89.70 1y2qA 143 89.92