# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yt8A 539 3.92e-16 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2oucA 142 3.03e-15 2hhgA 139 4.88e-15 1rhsA 296 4.90e-15 c.46.1.2,c.46.1.2 32703,32704 1whbA 157 5.03e-15 c.46.1.4 114639 1c25 161 1.21e-14 2j6pA 152 1.66e-14 1qb0A 211 1.74e-14 c.46.1.1 32699 1e0cA 271 2.17e-14 c.46.1.2,c.46.1.2 32717,32718 1gmxA 108 2.21e-14 c.46.1.3 65355 1t3kA 152 3.97e-14 c.46.1.1 106357 2a2kA 175 4.68e-14 1ymkA 175 5.94e-14 c.46.1.1 123699 1uarA 285 1.31e-13 c.46.1.2,c.46.1.2 107762,107763 1rhs 296 1.53e-13 2fsxA 148 1.97e-13 2gwfA 157 6.09e-13 c.46.1.4 135802 1okgA 373 1.35e-12 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 3.38e-11 1wv9A 94 1.42e-09 2b4pA 334 2.375 2c3zA 222 2.458 1yn9A 169 4.798 2f46A 156 5.053 5nulA 138 6.089 c.23.5.1 31191 1zclA 180 8.029 1x24A 180 10.31 1rxdA 159 11.73 c.45.1.1 111959 1yz4A 160 11.85 2b4uA 335 12.40 2c46A 241 14.53 1ywfA 296 14.61 c.45.1.5 124144 2imgA 151 15.50 1f60A 458 19.61 b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1zckA 154 20.51 2i6jA 161 21.16 2p1zA 180 21.20 1y0eA 223 21.89 c.1.2.5 116297 2hlkA 255 22.39 5nul 138 22.41 1d2eA 397 23.78 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1su8A 636 24.35 e.26.1.2 98999 1vhrA 184 25.94 c.45.1.1 32651 1d5rA 324 25.95 b.7.1.1,c.45.1.1 23181,32697 2oycA 306 26.11 2hxpA 155 27.38 2i8aA 252 28.82 2cftA 298 28.89 1y0bA 197 29.15 c.61.1.1 122476 2c78A 405 29.19 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1fpzA 212 31.55 c.45.1.1 59976 2pibA 216 31.84 2citA 282 32.92 c.1.8.3 130499 1wchA 315 33.17 c.45.1.2 114508 1o6dA 163 35.70 c.116.1.3 92567 1qgoA 264 36.53 c.92.1.2 35596 3b2yA 275 38.05 1vmkA 277 41.46 c.56.2.1 113680 3bfxA 296 43.74 1y0yA 353 43.85 b.49.3.1,c.56.5.4 122514,122515 1npyA 271 43.99 c.2.1.7,c.58.1.5 85995,85996 1n2zA 245 44.41 c.92.2.2 79865 2hi0A 240 44.86 2cybA 323 45.75 2j16A 182 46.83 2b4gA 317 47.11 c.1.4.1 127829 2hrdA 253 47.14 1je0A 236 47.34 c.56.2.1 66581 2omkA 231 47.90 1yfnA 118 48.32 b.136.1.1 123080 2ps1A 226 48.98 2a67A 167 50.91 2go7A 207 53.17 c.108.1.6 135434 1v04A 355 55.02 b.68.6.2 100240 1zzwA 149 55.66 2a5lA 200 55.99 c.23.5.8 126176 1v2dA 381 56.11 c.67.1.1 108281 1cexA 214 57.45 c.69.1.30 31285 1exmA 405 58.30 b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1wrmA 165 58.48 2c5sA 413 58.96 c.26.2.6,d.308.1.1 129950,129951 2hcmA 164 59.81 1rcf 169 60.18 1u24A 337 61.41 c.45.1.4 112968 2oqxA 467 63.05 1yloA 348 64.52 b.49.3.1,c.56.5.4 123659,123660 1oboA 169 65.35 c.23.5.1 86776 1r61A 207 66.63 c.8.8.1 97138 3b5vA 248 67.39 1dxy 333 70.07 1ny1A 240 70.33 c.6.2.3 86395 2c2xA 281 70.43 2e0tA 151 71.53 1xfoA 357 72.37 b.49.3.1,c.56.5.4 115265,115266 1lw3A 657 72.62 b.55.1.8,c.45.1.3 91152,91153 1igs 248 73.27 2ggsA 273 74.38 1oywA 523 74.44 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1fc6A 388 74.84 b.36.1.3,c.14.1.2 64738,64739 1zin 217 75.25 1jubA 311 75.77 c.1.4.1 90908 1oheA 348 77.91 c.45.1.1,c.45.1.1 87013,87014 1aipA 405 78.37 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2dy0A 190 78.81 1jnyA 435 79.42 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1w5fA 353 80.30 c.32.1.1,d.79.2.1 114247,114248 1b5pA 385 80.74 c.67.1.1 90403 1wtaA 275 81.62 1rmwA 212 82.39 2esbA 188 82.52 2f4dA 184 82.80 2ijaA 295 84.38 2yzkA 178 84.68 1tezA 474 86.71 a.99.1.1,c.28.1.1 112409,112410 1h3gA 601 87.00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1rxyA 253 87.97 c.56.2.1 98065 1u0jA 267 88.06 c.37.1.20 107546 2eo5A 419 88.73 2yv1A 294 88.73