# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yt8A	539	1.53e-18	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1whbA	157	2.81e-18	c.46.1.4	114639
2hhgA	139	5.81e-18		
2oucA	142	8.99e-18		
1qb0A	211	1.77e-17	c.46.1.1	32699
1c25	161	3.04e-17		
1t3kA	152	4.05e-17	c.46.1.1	106357
2j6pA	152	7.15e-17		
1gmxA	108	7.75e-17	c.46.1.3	65355
1rhsA	296	9.09e-17	c.46.1.2,c.46.1.2	32703,32704
1ymkA	175	1.29e-16	c.46.1.1	123699
2a2kA	175	1.34e-16		
1e0cA	271	4.08e-16	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	1.01e-15		
1uarA	285	1.49e-15	c.46.1.2,c.46.1.2	107762,107763
2gwfA	157	3.04e-15	c.46.1.4	135802
1okgA	373	1.16e-14	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
1rhs	296	2.08e-14		
2eg4A	230	5.87e-13		
1wv9A	94	1.34e-11		
2b4pA	334	3.398		
2f46A	156	4.767		
1zclA	180	5.629		
2b4uA	335	6.790		
2c3zA	222	7.016		
5nulA	138	10.18	c.23.5.1	31191
1ywfA	296	12.74	c.45.1.5	124144
2c46A	241	13.47		
1yn9A	169	16.86		
1rxdA	159	19.88	c.45.1.1	111959
1zckA	154	20.71		
2oycA	306	22.33		
1d5rA	324	24.89	b.7.1.1,c.45.1.1	23181,32697
1yz4A	160	26.11		
1d2eA	397	30.95	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2omkA	231	32.26		
5nul	138	33.93		
2cybA	323	34.66		
1fpzA	212	36.53	c.45.1.1	59976
1x24A	180	36.57		
2i6jA	161	37.52		
2ggsA	273	37.76		
3bfxA	296	38.77		
2i8aA	252	39.94		
2eo5A	419	43.52		
2ps1A	226	43.80		
2p1zA	180	44.10		
2a5lA	200	44.51	c.23.5.8	126176
3b2yA	275	45.04		
2c78A	405	45.08	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
1y0eA	223	45.70	c.1.2.5	116297
1yloA	348	45.73	b.49.3.1,c.56.5.4	123659,123660
1yfnA	118	46.51	b.136.1.1	123080
1y0bA	197	47.45	c.61.1.1	122476
3cssA	267	48.93		
1l1eA	287	50.63	c.66.1.18	73454
2dy0A	190	52.09		
1vddA	228	52.38	e.49.1.1	108519
2c29D	337	52.60		
2j9iA	421	54.64		
1je0A	236	55.48	c.56.2.1	66581
1wchA	315	56.06	c.45.1.2	114508
2c2xA	281	56.49		
1lw3A	657	57.07	b.55.1.8,c.45.1.3	91152,91153
2imgA	151	57.10		
2hrdA	253	57.74		
1y0yA	353	58.27	b.49.3.1,c.56.5.4	122514,122515
1f60A	458	58.42	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
2cftA	298	60.13		
2pibA	216	60.97		
2gb4A	252	62.39		
1u1zA	168	64.17	d.38.1.6	107602
1t8sA	484	66.76	c.56.2.1	106679
1vmkA	277	69.14	c.56.2.1	113680
1zavA	180	71.51		
1kpgA	287	71.95	c.66.1.18	68735
2b4gA	317	73.12	c.1.4.1	127829
1v04A	355	73.18	b.68.6.2	100240
1qd1A	325	73.78	d.58.34.1,d.58.34.1	39493,39494
1xfoA	357	74.89	b.49.3.1,c.56.5.4	115265,115266
1aipA	405	76.46	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1vhrA	184	76.85	c.45.1.1	32651
2fe7A	166	81.58	d.108.1.1	133325
1u0jA	267	81.66	c.37.1.20	107546
1rmwA	212	85.41		
1oboA	169	87.18	c.23.5.1	86776
1h4pA	408	87.30	c.1.8.3	90617
2hhjA	267	87.57	c.60.1.1	136497
1s5jA	847	89.37	c.55.3.5,e.8.1.1	112040,112041
1lurA	339	89.42	b.30.5.4	84717
1o1xA	155	89.43	c.121.1.1	86553