# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yt8A	539	5.26e-17	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2hhgA	139	1.62e-16		
1whbA	157	2.85e-16	c.46.1.4	114639
2oucA	142	2.99e-16		
1qb0A	211	5.26e-16	c.46.1.1	32699
1rhsA	296	9.27e-16	c.46.1.2,c.46.1.2	32703,32704
1c25	161	1.54e-15		
1gmxA	108	2.05e-15	c.46.1.3	65355
2j6pA	152	2.22e-15		
1t3kA	152	2.72e-15	c.46.1.1	106357
2a2kA	175	3.57e-15		
1ymkA	175	3.87e-15	c.46.1.1	123699
1e0cA	271	6.50e-15	c.46.1.2,c.46.1.2	32717,32718
2fsxA	148	1.63e-14		
1uarA	285	1.98e-14	c.46.1.2,c.46.1.2	107762,107763
1rhs	296	8.71e-14		
1okgA	373	1.44e-13	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2gwfA	157	1.53e-13	c.46.1.4	135802
2eg4A	230	6.96e-12		
1wv9A	94	1.49e-10		
2b4pA	334	3.348		
2f46A	156	3.950		
1zclA	180	4.163		
2b4uA	335	4.429		
2c3zA	222	6.774		
1yn9A	169	7.278		
5nulA	138	7.879	c.23.5.1	31191
2c46A	241	8.959		
1ywfA	296	10.67	c.45.1.5	124144
2imgA	151	11.14		
1rxdA	159	13.53	c.45.1.1	111959
1yz4A	160	14.32		
1zckA	154	19.84		
1x24A	180	20.21		
2ps1A	226	26.15		
2oycA	306	26.40		
1y0bA	197	26.48	c.61.1.1	122476
1d5rA	324	27.75	b.7.1.1,c.45.1.1	23181,32697
1je0A	236	28.75	c.56.2.1	66581
1fpzA	212	29.31	c.45.1.1	59976
1yfnA	118	29.36	b.136.1.1	123080
2cybA	323	31.20		
2i6jA	161	33.14		
5nul	138	33.54		
2eo5A	419	34.92		
1wchA	315	36.95	c.45.1.2	114508
1vmkA	277	38.35	c.56.2.1	113680
1v04A	355	39.87	b.68.6.2	100240
2dy0A	190	40.21		
2omkA	231	41.10		
2i8aA	252	43.26		
1d2eA	397	43.62	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2p1zA	180	43.73		
3bfxA	296	44.06		
2c2xA	281	44.65		
1y0eA	223	46.85	c.1.2.5	116297
2b4gA	317	47.58	c.1.4.1	127829
1l1eA	287	48.71	c.66.1.18	73454
2gb4A	252	51.56		
1vhrA	184	52.40	c.45.1.1	32651
2c5sA	413	53.53	c.26.2.6,d.308.1.1	129950,129951
2dm6A	333	54.14	b.35.1.2,c.2.1.1	131567,131568
1f60A	458	55.24	b.43.3.1,b.44.1.1,c.37.1.8	25705,25745,32140
2yv1A	294	58.65		
1lw3A	657	59.82	b.55.1.8,c.45.1.3	91152,91153
2fh7A	595	61.14		
1t8sA	484	61.81	c.56.2.1	106679
2fe7A	166	62.27	d.108.1.1	133325
1qgoA	264	62.31	c.92.1.2	35596
1y0yA	353	63.01	b.49.3.1,c.56.5.4	122514,122515
1wrmA	165	63.18		
2esbA	188	66.24		
2a5lA	200	66.41	c.23.5.8	126176
1zavA	180	68.32		
2hrdA	253	68.39		
2cftA	298	68.63		
2c29D	337	70.04		
1oheA	348	70.05	c.45.1.1,c.45.1.1	87013,87014
2ggsA	273	70.39		
1xxpA	306	70.46	c.45.1.2	122423
1yloA	348	70.72	b.49.3.1,c.56.5.4	123659,123660
2yzkA	178	71.13		
1i9gA	280	72.50	c.66.1.13	62090
1vrvA	101	73.89		
2pibA	216	75.48		
2hcmA	164	75.69		
1r61A	207	75.77	c.8.8.1	97138
3b2yA	275	76.05		
2o6yA	521	81.89		
2j9iA	421	83.19		
2c78A	405	83.73	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
1ou8A	111	84.03	b.136.1.1	93543
2hhjA	267	84.18	c.60.1.1	136497
1xfoA	357	85.24	b.49.3.1,c.56.5.4	115265,115266
3cssA	267	88.52