# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1whbA	157	2.57e-14	c.46.1.4	114639
2oucA	142	3.91e-14		
2hhgA	139	8.51e-14		
1qb0A	211	1.88e-13	c.46.1.1	32699
1rhsA	296	2.89e-13	c.46.1.2,c.46.1.2	32703,32704
1e0cA	271	2.96e-13	c.46.1.2,c.46.1.2	32717,32718
2j6pA	152	7.58e-13		
1yt8A	539	8.10e-13	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
1c25	161	9.10e-13		
1uarA	285	1.01e-12	c.46.1.2,c.46.1.2	107762,107763
1ymkA	175	1.27e-12	c.46.1.1	123699
2a2kA	175	1.68e-12		
1gmxA	108	3.11e-12	c.46.1.3	65355
1t3kA	152	5.59e-12	c.46.1.1	106357
2gwfA	157	6.51e-12	c.46.1.4	135802
2fsxA	148	1.00e-11		
1rhs	296	3.43e-11		
1okgA	373	6.61e-11	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	9.59e-10		
1wv9A	94	5.94e-07		
2f46A	156	4.446		
2b4uA	335	5.975		
2c46A	241	6.348		
1yn9A	169	6.843		
2b4pA	334	8.487		
1zclA	180	9.260		
2f4dA	184	14.98		
1i9sA	210	16.94	c.45.1.1	62099
2imgA	151	17.03		
2cftA	298	18.43		
2b4gA	317	19.01	c.1.4.1	127829
1fpzA	212	25.31	c.45.1.1	59976
2hi0A	240	27.41		
2esbA	188	28.89		
2i6jA	161	33.07		
1oheA	348	34.34	c.45.1.1,c.45.1.1	87013,87014
1yz4A	160	34.66		
1y0eA	223	35.91	c.1.2.5	116297
2r0bA	154	36.00		
2nt2A	145	36.20		
1a4iA	301	37.03	c.2.1.7,c.58.1.2	30278,33926
1zzwA	149	38.21		
2d2jA	329	39.69	c.1.9.3	131175
1rxdA	159	41.95	c.45.1.1	111959
1o6dA	163	42.97	c.116.1.3	92567
2oq2A	261	43.35		
1wrmA	165	44.02		
1vhrA	184	44.02	c.45.1.1	32651
1j7xA	302	47.43	c.14.1.2	66425
1jx6A	342	47.78	c.93.1.1	67406
3bxpA	277	48.91		
2dorA	311	51.53	c.1.4.1	28593
2hlkA	255	54.85		
1u24A	337	55.31	c.45.1.4	112968
1bf6A	291	55.95	c.1.9.3	29065
2c5sA	413	56.06	c.26.2.6,d.308.1.1	129950,129951
1jztA	246	56.22	c.104.1.1	63319
2c5aA	379	58.40	c.2.1.2	129894
1jubA	311	62.29	c.1.4.1	90908
2dbqA	334	63.27		
2c3zA	222	63.54		
2p4dA	172	63.59		
1usgA	346	64.05	c.93.1.1	99864
1xxpA	306	64.10	c.45.1.2	122423
1zckA	154	64.13		
2oycA	306	66.26		
1cexA	214	67.02	c.69.1.30	31285
1c9kA	180	68.45	c.37.1.11	32363
2hcmA	164	69.24		
2etvA	346	70.12	c.92.2.4	132372
2nrhA	219	71.48	c.55.1.13,c.55.1.13	138523,138524
1dorA	311	72.15	c.1.4.1	28595
2qu7A	288	72.21		
1z2wA	192	72.89	d.159.1.7	124390
1dtwB	342	73.81	c.36.1.7,c.48.1.2	31828,33102
1jlnA	297	73.86	c.45.1.2	63172
3brqA	296	74.98		
2go7A	207	75.71	c.108.1.6	135434
3cssA	267	76.14		
2ggsA	273	77.73		
1kssA	571	78.04	a.138.1.3,c.3.1.4,d.168.1.1	72928,72929,72930
1qb7A	236	78.84	c.61.1.1	34087
3c3kA	285	81.84		
2czqA	205	84.11		
2aeeA	211	87.35	c.61.1.1	126620