# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1yt8A	539	3.58e-12	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
2oucA	142	7.10e-12		
1whbA	157	7.27e-12	c.46.1.4	114639
2hhgA	139	9.04e-12		
1rhsA	296	1.91e-11	c.46.1.2,c.46.1.2	32703,32704
2j6pA	152	2.53e-11		
1qb0A	211	3.74e-11	c.46.1.1	32699
1uarA	285	5.79e-11	c.46.1.2,c.46.1.2	107762,107763
1c25	161	9.08e-11		
1e0cA	271	1.28e-10	c.46.1.2,c.46.1.2	32717,32718
1ymkA	175	1.45e-10	c.46.1.1	123699
1gmxA	108	1.71e-10	c.46.1.3	65355
2a2kA	175	1.76e-10		
1t3kA	152	2.12e-10	c.46.1.1	106357
1rhs	296	6.01e-10		
2fsxA	148	7.31e-10		
2gwfA	157	8.28e-10	c.46.1.4	135802
1okgA	373	2.05e-09	c.46.1.2,c.46.1.2,d.26.1.3	93250,93251,93252
2eg4A	230	7.96e-09		
1wv9A	94	2.61e-07		
1yn9A	169	6.175		
2b4uA	335	7.212		
2f46A	156	12.25		
2c46A	241	15.05		
2b4pA	334	15.94		
1zclA	180	16.11		
3b2yA	275	19.24		
1vhrA	184	23.93	c.45.1.1	32651
2fh7A	595	29.30		
1rxdA	159	32.60	c.45.1.1	111959
2imgA	151	35.03		
1d5rA	324	35.05	b.7.1.1,c.45.1.1	23181,32697
1x24A	180	36.66		
1zodA	433	37.90	c.67.1.4	125437
1lw3A	657	44.65	b.55.1.8,c.45.1.3	91152,91153
1oheA	348	44.81	c.45.1.1,c.45.1.1	87013,87014
1ywfA	296	45.36	c.45.1.5	124144
2d2jA	329	46.58	c.1.9.3	131175
1y0eA	223	48.18	c.1.2.5	116297
1zckA	154	48.73		
1ltqA	301	51.27	c.108.1.9,c.37.1.1	78208,78209
2b4gA	317	51.91	c.1.4.1	127829
2vc7A	314	54.45		
1i9sA	210	55.19	c.45.1.1	62099
1dqzA	280	57.30	c.69.1.3	34638
2a5lA	200	57.77	c.23.5.8	126176
2hi0A	240	58.22		
2bijA	305	60.01		
2c3zA	222	62.00		
1m3uA	264	62.51	c.1.12.8	84784
1jlnA	297	63.08	c.45.1.2	63172
1vjrA	271	65.93	c.108.1.14	100832
3bxpA	277	66.86		
2p9jA	162	68.04		
1j7xA	302	72.47	c.14.1.2	66425
2df8A	325	73.25		
1yz4A	160	76.61		
2eo5A	419	78.29		
2himA	358	78.60		
2cftA	298	78.81		
1w5fA	353	79.35	c.32.1.1,d.79.2.1	114247,114248
1fpzA	212	82.45	c.45.1.1	59976
2citA	282	83.12	c.1.8.3	130499
1zsqA	528	83.62	b.55.1.8,c.45.1.3	125616,125617
2pa5A	314	85.53		
1ytw	306	86.91		
2nvrA	423	86.93		
2b0mA	393	87.97	c.1.4.1	127644
1ydgA	211	88.52	c.23.5.8	116614
2p4dA	172	89.20		
1va0A	239	89.86	c.90.1.1	119899