# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hhgA 139 4.27e-12 1gmxA 108 2.70e-11 c.46.1.3 65355 1rhsA 296 3.01e-11 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 4.32e-11 1e0cA 271 7.65e-11 c.46.1.2,c.46.1.2 32717,32718 1whbA 157 1.27e-10 c.46.1.4 114639 1yt8A 539 1.38e-10 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 1uarA 285 1.39e-10 c.46.1.2,c.46.1.2 107762,107763 2gwfA 157 2.98e-10 c.46.1.4 135802 2j6pA 152 1.13e-09 1qb0A 211 1.25e-09 c.46.1.1 32699 2oucA 142 1.33e-09 2a2kA 175 2.16e-09 1ymkA 175 3.17e-09 c.46.1.1 123699 1c25 161 4.53e-09 1okgA 373 3.23e-08 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 2eg4A 230 3.14e-07 2fsxA 148 8.42e-07 1t3kA 152 7.88e-06 c.46.1.1 106357 1wv9A 94 2.92e-05 1i9sA 210 0.7310 c.45.1.1 62099 2c46A 241 0.7923 2b82A 211 2.496 c.108.1.12 128057 1s2oA 244 2.806 c.108.1.10 118846 1rmwA 212 3.767 1l1qA 186 6.526 c.61.1.1 77653 2a5hA 416 7.276 1qb7A 236 7.423 c.61.1.1 34087 1edzA 320 7.578 c.2.1.7,c.58.1.2 30287,33935 2oycA 306 9.143 1m3uA 264 11.34 c.1.12.8 84784 2a0uA 383 12.20 1lw3A 657 13.25 b.55.1.8,c.45.1.3 91152,91153 1o66A 275 13.88 c.1.12.8 92547 2igbA 179 15.46 1ltqA 301 18.97 c.108.1.9,c.37.1.1 78208,78209 1rybA 212 18.97 c.56.3.1 98098 1v7zA 260 19.87 c.125.1.1 100488 1xs5A 241 20.84 c.94.1.1 115912 1zckA 154 21.42 1lsuA 147 21.85 c.2.1.9 74250 2hcfA 234 22.04 c.108.1.6 136333 1bd3A 243 22.54 c.61.1.1 34098 2cukA 311 24.62 2pibA 216 26.68 1va0A 239 26.89 c.90.1.1 119899 2qrlA 394 27.16 2dbqA 334 27.31 2qhqA 125 27.63 2cftA 298 28.24 2egxA 269 28.41 1zrnA 232 28.43 c.108.1.1 43323 1lssA 140 29.45 c.2.1.9 74246 1l6rA 227 29.58 c.108.1.10 77768 1r1mA 164 30.18 d.79.7.1 96820 1rxdA 159 30.94 c.45.1.1 111959 2j9iA 421 31.51 2ehjA 208 31.51 1zjjA 263 32.13 2rbkA 261 32.34 2gfhA 260 33.56 c.108.1.6 135096 1wljA 189 34.02 c.55.3.5 114734 1f52A 468 34.64 d.15.9.1,d.128.1.1 37839,41169 1mumA 295 35.34 c.1.12.7 85108 1nriA 306 35.76 c.80.1.3 86123 2f6kA 307 35.86 c.1.9.15 133047 2bl0B 145 37.01 2hmvA 144 37.19 c.2.1.9 136615 2nv1A 305 39.76 2hdoA 209 40.86 c.108.1.6 136345 2f46A 156 41.50 1yn9A 169 41.74 1oheA 348 42.01 c.45.1.1,c.45.1.1 87013,87014 2p5yA 311 42.93 1o08A 221 43.14 c.108.1.6 86525 1y0bA 197 46.11 c.61.1.1 122476 1b8oA 284 46.69 c.56.2.1 33762 2no4A 240 46.74 1a0p 290 46.75 1pa7A 130 46.78 a.40.1.1 94410 1o1zA 234 47.03 c.1.18.3 86555 1r3eA 309 47.05 b.122.1.1,d.265.1.2 96907,96908 2c4nA 250 47.15 c.108.1.14 129837 1htqA 477 47.29 d.15.9.1,d.128.1.1 71035,71036 1wdjA 187 48.05 c.52.1.27 114536 1whnA 128 48.68 d.50.1.1 114648 2om6A 235 49.08 1sc6A 404 49.60 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2i6jA 161 50.37 2j5bA 348 51.83 1ta9A 450 51.84 2b4pA 334 53.02 2zdrA 349 53.57 1rkqA 282 53.65 c.108.1.10 97621 2hbvA 334 54.23 c.1.9.15 136320 2qe6A 274 54.63 2gcgA 330 56.45 2ddmA 283 56.54 1yc5A 246 56.54 c.31.1.5 122910 1k4iA 233 57.21 d.115.1.2 72056 1xg4A 295 57.92 2g76A 335 59.06 1ydnA 295 59.11 1id1A 153 60.82 c.2.1.9 62286 1o0sA 605 62.99 c.2.1.7,c.58.1.3 86540,86541 1wd5A 208 63.14 c.61.1.1 114524 3bi1A 709 63.74 2z2iA 191 63.81 3bk2A 562 64.32 1bf6A 291 64.91 c.1.9.3 29065 2fckA 181 65.35 d.108.1.1 133272 1zn8A 180 66.33 c.61.1.1 125376 2g1uA 155 68.26 1zclA 180 70.69 1zgdA 312 71.02 1j7jA 178 71.41 c.61.1.1 84131 2uyoA 310 71.96 1vmkA 277 72.08 c.56.2.1 113680 2i00A 406 72.37 1d5rA 324 74.95 b.7.1.1,c.45.1.1 23181,32697 2dtjA 178 75.41 2fdrA 229 76.14 c.108.1.6 133319 1a3cA 181 76.14 c.61.1.1 34095 1qamA 244 77.79 c.66.1.24 34220 1goxA 369 78.78 c.1.4.1 28607 2hlkA 255 80.23 2hlsA 243 80.58 1rv9A 259 81.79 d.194.1.2 105105 2or4A 709 82.41 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 1fpzA 212 83.11 c.45.1.1 59976 2oibA 301 83.26 1xviA 275 84.22 c.108.1.10 116088 2b8tA 223 84.43 c.37.1.24,g.39.1.14 128109,128110 1xo0A 324 84.54 a.60.9.1,d.163.1.1 115674,115675 1c7sA 858 85.42 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1a4iA 301 85.49 c.2.1.7,c.58.1.2 30278,33926 2bvcA 486 85.88 d.15.9.1,d.128.1.1 129243,129244 1d2zB 153 86.02 a.77.1.2 18439 3bhxA 709 88.71 1g2qA 187 88.90 c.61.1.1 65117 2r3iA 298 89.15