Best Alignments for T0388

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2p5qA/T0388-2p5qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2p5qA/T0388-2p5qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6755e-231.20e-118
2obiA/T0388-2obiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2obiA/T0388-2obiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1927e-211.78e-108
1gp1A/T0388-1gp1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gp1A/T0388-1gp1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9008e-196.84e-101 1gp1A c.47.1.10
2r37A/T0388-2r37A-t2k-global-adpstyle1.a2m 2r37A/T0388-2r37A-t2k-global-adpstyle1.al 3.0156e-164.65e-48
2p31A/T0388-2p31A-simplesw-adpstyle1.a2m 2p31A/T0388-2p31A-simplesw-adpstyle1.al 1.1943e-151.94e-63
2gs3A/T0388-2gs3A-t2k-global-adpstyle1.a2m 2gs3A/T0388-2gs3A-t2k-global-adpstyle1.al 2.7529e-151.85e-57
2i3yA/T0388-2i3yA-t2k-global-adpstyle1.a2m 2i3yA/T0388-2i3yA-t2k-global-adpstyle1.al 2.2816e-133.30e-50
2he3A/T0388-2he3A-t2k-global-adpstyle1.a2m 2he3A/T0388-2he3A-t2k-global-adpstyle1.al 3.9143e-131.13e-50
2h1bA/T0388-2h1bA-t2k-global-adpstyle1.a2m 2h1bA/T0388-2h1bA-t2k-global-adpstyle1.al 1.0743e-121.57e-42
2ywiA/T0388-2ywiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ywiA/T0388-2ywiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2879e-122.21e-67

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001