Best Alignments for T0388

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2p5qA/T0388-2p5qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2p5qA/T0388-2p5qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9850e-261.20e-118
2obiA/T0388-2obiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2obiA/T0388-2obiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9607e-251.78e-108
2f8aA/T0388-2f8aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f8aA/T0388-2f8aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0688e-222.55e-100 c.47.1.10
2r37A/T0388-2r37A-t2k-global-adpstyle1.a2m 2r37A/T0388-2r37A-t2k-global-adpstyle1.al 2.8400e-214.65e-48
2ywiA/T0388-2ywiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ywiA/T0388-2ywiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2463e-121.56e-55
2hyxA/T0388-2hyxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hyxA/T0388-2hyxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4506e-121.11e-50
2ywnA/T0388-2ywnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ywnA/T0388-2ywnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5571e-118.97e-63
2b1kA/T0388-2b1kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b1kA/T0388-2b1kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9490e-111.52e-58
2p31A/T0388-2p31A-t2k-global-adpstyle1.a2m 2p31A/T0388-2p31A-t2k-global-adpstyle1.al 1.7414e-093.13e-57
2gs3A/T0388-2gs3A-t2k-global-adpstyle1.a2m 2gs3A/T0388-2gs3A-t2k-global-adpstyle1.al 2.8386e-091.85e-57

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001