Best Alignments for T0388

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2p5qA/T0388-2p5qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2p5qA/T0388-2p5qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0526e-212.83e-107
2obiA/T0388-2obiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2obiA/T0388-2obiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9940e-196.20e-100
1gp1A/T0388-1gp1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gp1A/T0388-1gp1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4717e-171.26e-88 1gp1A c.47.1.10
2r37A/T0388-2r37A-t04-global-adpstyle1.a2m 2r37A/T0388-2r37A-t04-global-adpstyle1.al 4.5935e-163.17e-40
2ywiA/T0388-2ywiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ywiA/T0388-2ywiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4084e-132.21e-67
2hyxA/T0388-2hyxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hyxA/T0388-2hyxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2415e-121.99e-61
2p31A/T0388-2p31A-t04-global-adpstyle1.a2m 2p31A/T0388-2p31A-t04-global-adpstyle1.al 3.4234e-121.21e-48
2gs3A/T0388-2gs3A-t04-global-adpstyle1.a2m 2gs3A/T0388-2gs3A-t04-global-adpstyle1.al 6.9377e-123.14e-48
2ywnA/T0388-2ywnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ywnA/T0388-2ywnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1601e-122.43e-75
2b1kA/T0388-2b1kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b1kA/T0388-2b1kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1465e-113.61e-61

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001