# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 4.47e-19 1g9oA 91 1.84e-18 b.36.1.1 60400 1tp5A 119 4.31e-18 b.36.1.1 119305 2he2A 102 6.29e-18 2uzcA 88 6.42e-18 2egoA 96 9.62e-18 2pktA 91 1.06e-17 1wf7A 103 1.13e-17 b.36.1.1 114577 2he4A 90 1.22e-17 2iwnA 97 1.26e-17 2jikA 101 1.35e-17 1pdr 99 1.40e-17 2fneA 117 1.55e-17 b.36.1.1 133813 2opgA 98 1.61e-17 1n7eA 97 1.62e-17 b.36.1.1 91691 1be9A 119 1.79e-17 b.36.1.1 24774 2awxA 105 2.46e-17 1i92A 91 3.48e-17 b.36.1.1 61990 2qg1A 92 3.68e-17 2fe5A 94 4.43e-17 b.36.1.1 133323 1m5zA 91 5.45e-17 b.36.1.1 78676 2f0aA 98 5.60e-17 b.36.1.1 132661 2jilA 97 5.62e-17 1qauA 112 6.14e-17 b.36.1.1 24779 1x45A 98 8.00e-17 b.36.1.1 121679 2i1nA 102 8.00e-17 1qavA 90 9.02e-17 b.36.1.1 24777 1v5lA 103 9.52e-17 b.36.1.1 108378 2q3gA 89 1.03e-16 2ocsA 88 1.12e-16 2gzvA 114 1.16e-16 2eaqA 90 1.30e-16 2q9vA 90 1.61e-16 2i04A 85 1.65e-16 1q3oA 109 1.65e-16 b.36.1.1 95700 1kwaA 88 3.56e-16 b.36.1.1 24772 2h3lA 103 3.82e-16 b.36.1.1 136046 2pa1A 87 6.03e-16 2iwoA 120 6.45e-16 1fc6A 388 8.12e-16 b.36.1.3,c.14.1.2 64738,64739 2f5yA 91 8.68e-16 b.36.1.1 133015 1ihjA 98 1.06e-15 b.36.1.1 62382 2h2bA 107 1.34e-15 1nf3C 128 1.40e-15 b.36.1.1 85596 1b8qA 127 3.99e-15 b.36.1.1 24781 2vphA 100 5.87e-15 1r6jA 82 7.63e-15 b.36.1.1 97151 1mfgA 95 9.53e-15 b.36.1.1 79043 2rczA 81 1.06e-14 2fcfA 103 1.70e-14 b.36.1.1 133267 1l6oA 95 1.81e-14 b.36.1.1 84534 1qavB 115 6.69e-14 b.36.1.1 24780 2qkvA 96 1.15e-13 2reyA 100 2.76e-13 1ky9A 448 6.98e-13 b.36.1.4,b.47.1.1 73198,73199 3bpuA 88 1.77e-12 2p3wA 112 7.24e-10 1lcyA 325 8.90e-10 b.36.1.4,b.47.1.1 73834,73835 2i6vA 87 3.33e-09 1y8tA 324 3.46e-09 b.36.1.4,b.47.1.1 122763,122764 1te0A 318 6.40e-09 b.36.1.4,b.47.1.1 112400,112401 1sotA 320 1.05e-07 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 3.71e-06 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 1.64e-05 b.55.1.1 126599 1k32A 1045 2.20e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.01028 c.14.1.2 66425 2ps1A 226 0.2357 2yzkA 178 0.4113 1rqpA 299 0.5587 b.141.1.1,c.132.1.1 97754,97755 1y0bA 197 0.6759 c.61.1.1 122476 1zn8A 180 0.7544 c.61.1.1 125376 1ao0A 459 0.7990 c.61.1.1,d.153.1.1 34049,41816 1oroA 213 1.298 c.61.1.1 34093 2cw5A 255 1.491 1lh0A 213 1.682 c.61.1.1 73896 2dy0A 190 2.153 2p1zA 180 2.154 2f4nA 273 2.315 1opr 213 2.921 2aeeA 211 4.241 c.61.1.1 126620 1ecfA 504 4.404 c.61.1.1,d.153.1.1 34053,41820 1p16A 395 5.114 b.40.4.6,d.142.2.3 87661,87662 1ypvA 313 5.230 2q6kA 283 6.052 2g8mA 264 7.889 2g8oA 264 7.924 d.117.1.1 134779 1vchA 175 8.094 c.61.1.1 119980 1gph1 465 8.220 1dekA 241 8.812 c.37.1.1 31842 1ckmA 330 9.181 b.40.4.6,d.142.2.3 25358,41585 3bkxA 275 10.74 1qyrA 252 11.09 c.66.1.24 104657 2plcA 274 11.77 c.1.18.2 29614 2igbA 179 12.54 1g2qA 187 12.77 c.61.1.1 65117 1dy2A 180 14.46 d.169.1.5 42451 1zq9A 285 14.74 c.66.1.24 125505 1l1qA 186 15.17 c.61.1.1 77653 1f28A 297 15.50 d.117.1.1 59608 1wd5A 208 16.23 c.61.1.1 114524 1fr3A 67 16.41 b.40.6.1 25436 1o57A 291 16.58 a.4.5.40,c.61.1.1 92483,92484 2q07A 306 16.67 1g0rA 293 17.09 c.68.1.6 34532 1vs0A 310 17.51 1l2tA 235 18.76 c.37.1.12 73514 1lam 484 19.82 1bllE 488 20.64 c.50.1.1,c.56.5.3 33170,33833 1bkpA 278 20.96 d.117.1.1 41029 1f6yA 262 21.51 c.1.21.2 29673 1q7zA 566 21.98 c.1.21.2,c.1.26.1 96090,96091 2yvaA 196 23.43 1b02A 279 25.26 d.117.1.1 41035 2i71A 400 25.77 1omoA 322 26.37 c.2.1.13 104017 1koe 172 28.18 2h1rA 299 28.22 1u9yA 284 29.31 c.61.1.2,c.61.1.2 119655,119656 2qyaA 124 29.34 1h9jA 145 29.92 b.40.6.2,b.40.6.2 60829,60830 1ipaA 274 30.53 c.116.1.1,d.79.3.3 71254,71255 1s8nA 205 30.64 c.23.1.1 105374 1uc2A 481 31.44 d.261.1.1 99161 2guiA 194 32.14 c.55.3.5 135737 1qb7A 236 32.25 c.61.1.1 34087 1o58A 303 33.47 c.79.1.1 92491 2jbhA 225 33.53 2e7fA 262 33.82 1xm7A 195 36.48 d.159.1.8 115473 2cfmA 561 38.23 1vdmA 153 39.49 c.61.1.1 119994 1pwhA 327 39.53 c.79.1.1 95224 1z7yA 322 40.59 c.79.1.1 124679 1h9mA 145 42.26 b.40.6.2,b.40.6.2 60833,60834 1r94A 118 42.48 b.124.1.1 97251 1gsjA 258 43.85 c.73.1.2 70397 2ek5A 129 45.75 1j53A 186 46.48 c.55.3.5 77076 1vqoA 240 46.54 b.34.5.3,b.40.4.5 120361,120362 2a6cA 83 47.70 a.35.1.13 126236 2a9oA 120 48.10 c.23.1.1 126444 2ebuA 112 49.54 2o28A 184 49.99 1s98A 107 50.36 b.124.1.1 105377 1h9fA 57 50.53 a.140.1.1 60826 1ta9A 450 51.06 1rwsA 77 51.54 d.15.3.2 97991 2zayA 147 52.77 1nwbA 124 52.82 b.124.1.1 86296 1ecfB 504 53.38 c.61.1.1,d.153.1.1 34054,41821 1pl8A 356 54.52 b.35.1.2,c.2.1.1 94878,94879 1p5jA 372 56.24 c.79.1.1 104067 1ev5A 264 56.60 d.117.1.1 40935 2d9iA 96 56.85 3bs5B 80 59.08 2ywuA 181 68.79 2zdrA 349 69.15 1u0sY 118 69.51 c.23.1.1 107566 1mb3A 124 70.24 c.23.1.1 78907 2yvlA 248 70.32 2hldD 478 70.63 2zbvA 263 71.25 2dkzA 84 71.73 1z7gA 217 74.07 c.61.1.1 124624 2bgxA 261 76.02 a.20.1.1,d.118.1.1 128504,128505 1aiqA 264 77.52 d.117.1.1 40967 3bs5A 106 77.61 2go3A 267 78.83 d.14.1.7,d.14.1.7 135422,135423 1axwA 265 78.95 d.117.1.1 40938 2hivA 621 81.64 2z1cA 75 81.76 1jj2A 239 83.47 b.34.5.3,b.40.4.5 63084,63085 1h6kZ 98 83.68 d.58.7.1 60686 2scuA 288 85.89 c.2.1.8,c.23.4.1 30303,31131 1nb8A 353 86.52 d.3.1.9 80385 2epgA 487 88.79 2ikkA 173 89.68 2achA 360 89.98 e.1.1.1 42626