# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozfA 92 1.50e-16 1g9oA 91 2.78e-16 b.36.1.1 60400 2uzcA 88 4.29e-16 2eaqA 90 6.98e-16 2pktA 91 7.50e-16 2he2A 102 8.38e-16 1tp5A 119 1.02e-15 b.36.1.1 119305 2qg1A 92 1.03e-15 2iwnA 97 1.04e-15 2opgA 98 1.11e-15 2egoA 96 1.18e-15 2jikA 101 1.64e-15 1wf7A 103 1.76e-15 b.36.1.1 114577 2fneA 117 1.89e-15 b.36.1.1 133813 2awxA 105 1.91e-15 2he4A 90 2.08e-15 1n7eA 97 2.30e-15 b.36.1.1 91691 1pdr 99 2.43e-15 1qauA 112 2.47e-15 b.36.1.1 24779 2fe5A 94 2.76e-15 b.36.1.1 133323 1be9A 119 3.35e-15 b.36.1.1 24774 2f0aA 98 3.45e-15 b.36.1.1 132661 2i04A 85 3.66e-15 2ocsA 88 4.36e-15 2jilA 97 4.44e-15 1x45A 98 4.88e-15 b.36.1.1 121679 2q9vA 90 6.78e-15 2i1nA 102 7.02e-15 2gzvA 114 7.17e-15 2f5yA 91 7.20e-15 b.36.1.1 133015 2pa1A 87 8.45e-15 1i92A 91 1.14e-14 b.36.1.1 61990 1v5lA 103 1.25e-14 b.36.1.1 108378 1qavA 90 1.36e-14 b.36.1.1 24777 2q3gA 89 1.37e-14 1m5zA 91 1.71e-14 b.36.1.1 78676 1q3oA 109 1.99e-14 b.36.1.1 95700 1kwaA 88 3.55e-14 b.36.1.1 24772 2iwoA 120 4.11e-14 1fc6A 388 5.55e-14 b.36.1.3,c.14.1.2 64738,64739 2h3lA 103 5.57e-14 b.36.1.1 136046 2h2bA 107 7.94e-14 2vphA 100 8.57e-14 1nf3C 128 1.43e-13 b.36.1.1 85596 1ihjA 98 1.69e-13 b.36.1.1 62382 2fcfA 103 3.06e-13 b.36.1.1 133267 1b8qA 127 3.71e-13 b.36.1.1 24781 1r6jA 82 4.66e-13 b.36.1.1 97151 1mfgA 95 4.69e-13 b.36.1.1 79043 1l6oA 95 5.01e-13 b.36.1.1 84534 1qavB 115 8.13e-13 b.36.1.1 24780 2qkvA 96 1.56e-12 2rczA 81 1.97e-12 2reyA 100 4.06e-12 3bpuA 88 3.24e-11 1ky9A 448 3.51e-11 b.36.1.4,b.47.1.1 73198,73199 2p3wA 112 3.74e-09 1lcyA 325 1.08e-08 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 2.50e-08 b.36.1.4,b.47.1.1 112400,112401 2i6vA 87 3.08e-08 1y8tA 324 3.52e-08 b.36.1.4,b.47.1.1 122763,122764 1sotA 320 3.09e-07 b.36.1.4,b.47.1.1 105852,105853 1n6eA 1071 1.23e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 2adzA 178 1.59e-05 b.55.1.1 126599 1k32A 1045 7.75e-05 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1j7xA 302 0.000854 c.14.1.2 66425 1oroA 213 0.3947 c.61.1.1 34093 2ps1A 226 0.4858 2yzkA 178 0.5287 1y0bA 197 0.8489 c.61.1.1 122476 1rqpA 299 0.9944 b.141.1.1,c.132.1.1 97754,97755 1lh0A 213 1.282 c.61.1.1 73896 1ao0A 459 1.941 c.61.1.1,d.153.1.1 34049,41816 2g8oA 264 2.255 d.117.1.1 134779 2g8mA 264 2.373 2p1zA 180 3.177 1g0rA 293 3.233 c.68.1.6 34532 2cw5A 255 3.252 1ypvA 313 3.637 1ecfA 504 3.773 c.61.1.1,d.153.1.1 34053,41820 1dekA 241 4.357 c.37.1.1 31842 1zn8A 180 4.372 c.61.1.1 125376 2q6kA 283 5.260 1opr 213 6.614 2q07A 306 6.923 1vchA 175 7.270 c.61.1.1 119980 1vr5A 547 10.15 c.94.1.1 120437 1gph1 465 10.84 1yb2A 275 11.26 c.66.1.13 122868 2dy0A 190 11.72 1ev5A 264 12.69 d.117.1.1 40935 1z7yA 322 13.49 c.79.1.1 124679 2igbA 179 14.17 1l1qA 186 15.13 c.61.1.1 77653 1bkpA 278 17.78 d.117.1.1 41029 2nooA 502 19.49 1axwA 265 19.83 d.117.1.1 40938 2vesA 299 22.54 2f4nA 273 23.00 1u9yA 284 23.45 c.61.1.2,c.61.1.2 119655,119656 1b02A 279 24.28 d.117.1.1 41035 1eudA 311 24.60 c.2.1.8,c.23.4.1 30312,31140 1aiqA 264 25.50 d.117.1.1 40967 3bkxA 275 25.70 1uc2A 481 26.78 d.261.1.1 99161 1q33A 292 27.41 d.113.1.1 95657 1ta9A 450 27.57 2o7iA 592 28.99 1p16A 395 30.28 b.40.4.6,d.142.2.3 87661,87662 2tscA 264 33.22 d.117.1.1 40952 2d5wA 603 34.96 2yvaA 196 35.16 2go3A 267 36.19 d.14.1.7,d.14.1.7 135422,135423 1o58A 303 37.47 c.79.1.1 92491 1f6yA 262 38.05 c.1.21.2 29673 2guiA 194 39.32 c.55.3.5 135737 1evfA 264 43.56 d.117.1.1 40932 2bgxA 261 44.18 a.20.1.1,d.118.1.1 128504,128505 1f28A 297 44.62 d.117.1.1 59608 1wd5A 208 46.47 c.61.1.1 114524 2aeeA 211 48.14 c.61.1.1 126620 1qqqA 264 49.57 d.117.1.1 40931 1ckmA 330 50.66 b.40.4.6,d.142.2.3 25358,41585 1h5rA 293 50.74 c.68.1.6 65623 2plcA 274 51.41 c.1.18.2 29614 1zq9A 285 53.34 c.66.1.24 125505 1fr3A 67 56.17 b.40.6.1 25436 1p5jA 372 56.69 c.79.1.1 104067 1qyrA 252 56.81 c.66.1.24 104657 1dqpA 230 57.39 c.61.1.1 34069 1omoA 322 60.71 c.2.1.13 104017 1j53A 186 61.18 c.55.3.5 77076 1h4pA 408 61.47 c.1.8.3 90617 2scuA 288 62.57 c.2.1.8,c.23.4.1 30303,31131 2i71A 400 63.97 1ecfB 504 68.78 c.61.1.1,d.153.1.1 34054,41821 2ikkA 173 70.30 2epgA 487 70.62 1hvyA 288 73.95 d.117.1.1 41049 3ce9A 354 76.69 1m4yA 171 78.54 d.153.1.4 84802 1gsjA 258 78.81 c.73.1.2 70397 1b5eA 246 82.78 d.117.1.1 41056 1xtmA 175 83.94 1xtlA 175 84.12 1zgzA 122 84.55 c.23.1.1 125065 1xhfA 123 85.54 c.23.1.1 122003 1h9jA 145 87.89 b.40.6.2,b.40.6.2 60829,60830 2bi0A 337 89.90 d.38.1.4,d.38.1.4 128565,128566